Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CD007_RS17570 Genome accession   NZ_CP021903
Coordinates   3405013..3405726 (-) Length   237 a.a.
NCBI ID   WP_003228163.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400013..3410726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS17550 (CD007_17550) ghrB 3400158..3401135 (+) 978 WP_072173470.1 D-glycerate dehydrogenase -
  CD007_RS17555 (CD007_17555) psdB 3401172..3403112 (-) 1941 WP_041850493.1 lantibiotic ABC transporter permease PsdB -
  CD007_RS17560 (CD007_17560) psdA 3403087..3403866 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  CD007_RS17565 (CD007_17565) psdS 3403949..3405019 (-) 1071 WP_041850492.1 two-component sensor histidine kinase PsdS -
  CD007_RS17570 (CD007_17570) braR 3405013..3405726 (-) 714 WP_003228163.1 two-component system response regulator PsdR Regulator
  CD007_RS21250 - 3406073..3406843 (-) 771 WP_043940202.1 hypothetical protein -
  CD007_RS17580 (CD007_17580) - 3406971..3407180 (+) 210 WP_040081725.1 hypothetical protein -
  CD007_RS17585 (CD007_17585) yvcN 3407244..3408008 (-) 765 WP_080332556.1 arylamine N-acetyltransferase -
  CD007_RS17590 (CD007_17590) crh 3408009..3408266 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  CD007_RS17595 (CD007_17595) whiA 3408290..3409240 (-) 951 WP_003228147.1 DNA-binding protein WhiA -
  CD007_RS17600 (CD007_17600) mgfK 3409263..3410216 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27541.46 Da        Isoelectric Point: 4.6774

>NTDB_id=198189 CD007_RS17570 WP_003228163.1 3405013..3405726(-) (braR) [Bacillus subtilis strain ge28]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=198189 CD007_RS17570 WP_003228163.1 3405013..3405726(-) (braR) [Bacillus subtilis strain ge28]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCAAGAATAG
TGGAGCTTGGCGGGCTAACGATTTATCCTGATCAAAATGAAGCGGAGTGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43