Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CD007_RS10160 Genome accession   NZ_CP021903
Coordinates   2035563..2036693 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030563..2041693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS21270 (CD007_10110) - 2030796..2031089 (-) 294 WP_041520473.1 hypothetical protein -
  CD007_RS10115 (CD007_10115) yopB 2031329..2031555 (-) 227 Protein_1939 helix-turn-helix transcriptional regulator -
  CD007_RS10125 (CD007_10125) - 2031756..2032433 (-) 678 WP_249853174.1 hypothetical protein -
  CD007_RS10135 (CD007_10135) - 2033103..2033468 (+) 366 WP_038829962.1 hypothetical protein -
  CD007_RS10145 (CD007_10145) - 2033649..2033924 (+) 276 Protein_1942 SOS response-associated peptidase family protein -
  CD007_RS10150 (CD007_10150) - 2034198..2034572 (+) 375 WP_021481445.1 YoqO family protein -
  CD007_RS21510 (CD007_10155) - 2035284..2035430 (+) 147 Protein_1944 phage holin -
  CD007_RS10160 (CD007_10160) rapC 2035563..2036693 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  CD007_RS21030 - 2036683..2036826 (+) 144 WP_153801665.1 hypothetical protein -
  CD007_RS21350 (CD007_10165) - 2036980..2037180 (-) 201 WP_021481449.1 hypothetical protein -
  CD007_RS21355 - 2037402..2037776 (-) 375 Protein_1948 UV damage repair protein UvrX -
  CD007_RS10175 (CD007_10175) - 2037774..2037929 (-) 156 Protein_1949 T7SS effector LXG polymorphic toxin -
  CD007_RS10180 (CD007_10180) yobM 2038030..2038587 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  CD007_RS10185 (CD007_10185) aoxN 2038715..2040151 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  CD007_RS10190 (CD007_10190) csaA 2040401..2040733 (-) 333 WP_032725963.1 chaperone CsaA -
  CD007_RS10195 (CD007_10195) yobQ 2040798..2041523 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=198138 CD007_RS10160 WP_021481447.1 2035563..2036693(+) (rapC) [Bacillus subtilis strain ge28]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=198138 CD007_RS10160 WP_021481447.1 2035563..2036693(+) (rapC) [Bacillus subtilis strain ge28]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455