Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CD007_RS09510 Genome accession   NZ_CP021903
Coordinates   1882788..1883405 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain ge28     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1877788..1888405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS09480 (CD007_09480) yndJ 1878105..1879745 (+) 1641 WP_038827863.1 YndJ family protein -
  CD007_RS09485 (CD007_09485) - 1879835..1880149 (+) 315 WP_166668700.1 hypothetical protein -
  CD007_RS09490 (CD007_09490) pghL 1880373..1881131 (+) 759 WP_041850786.1 gamma-polyglutamate hydrolase PghL -
  CD007_RS09495 (CD007_09495) - 1881158..1881607 (-) 450 WP_015483284.1 YndM family protein -
  CD007_RS09500 (CD007_09500) fosM 1881816..1882250 (+) 435 WP_032725818.1 FosM family fosfomycin resistance protein -
  CD007_RS21335 - 1882159..1882436 (+) 278 Protein_1817 hypothetical protein -
  CD007_RS09510 (CD007_09510) dinR/lexA 1882788..1883405 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  CD007_RS09515 (CD007_09515) yneA 1883555..1883872 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  CD007_RS09520 (CD007_09520) dinL 1883891..1884544 (+) 654 WP_041850785.1 recombinase family protein -
  CD007_RS09525 (CD007_09525) ynzC 1884608..1884841 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  CD007_RS09530 (CD007_09530) recP/tkt 1885010..1887013 (+) 2004 WP_003231593.1 transketolase Machinery gene
  CD007_RS09535 (CD007_09535) sirA 1887166..1887612 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  CD007_RS09540 (CD007_09540) yneF 1887698..1887916 (+) 219 WP_003221221.1 YneF family protein -
  CD007_RS09545 (CD007_09545) ynzD 1887990..1888163 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=198136 CD007_RS09510 WP_003238209.1 1882788..1883405(-) (dinR/lexA) [Bacillus subtilis strain ge28]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=198136 CD007_RS09510 WP_003238209.1 1882788..1883405(-) (dinR/lexA) [Bacillus subtilis strain ge28]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACACACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1