Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   CD007_RS09040 Genome accession   NZ_CP021903
Coordinates   1738567..1738998 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain ge28     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733567..1743998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS09020 (CD007_09020) spoVS 1734128..1734388 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  CD007_RS09025 (CD007_09025) tdh 1734654..1735697 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  CD007_RS09030 (CD007_09030) kbl 1735710..1736888 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  CD007_RS09035 (CD007_09035) miaB 1737036..1738565 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CD007_RS09040 (CD007_09040) ymcA 1738567..1738998 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  CD007_RS09045 (CD007_09045) cotE 1739260..1739805 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  CD007_RS09050 (CD007_09050) hexA 1739938..1742514 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=198133 CD007_RS09040 WP_003231834.1 1738567..1738998(+) (ymcA) [Bacillus subtilis strain ge28]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=198133 CD007_RS09040 WP_003231834.1 1738567..1738998(+) (ymcA) [Bacillus subtilis strain ge28]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment