Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CD007_RS06645 Genome accession   NZ_CP021903
Coordinates   1276963..1278099 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271963..1283099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS06625 (CD007_06625) uxaA 1272413..1273906 (+) 1494 WP_041850944.1 altronate dehydratase family protein -
  CD007_RS06630 (CD007_06630) yjnA 1273945..1274709 (-) 765 WP_038828729.1 sulfite exporter TauE/SafE family protein -
  CD007_RS06635 (CD007_06635) bstD 1274934..1275398 (-) 465 WP_041850943.1 DinB family protein -
  CD007_RS06640 (CD007_06640) yjoB 1275547..1276818 (+) 1272 WP_041850942.1 ATPase YjoB -
  CD007_RS06645 (CD007_06645) rapC 1276963..1278099 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  CD007_RS06650 (CD007_06650) phrA 1278089..1278223 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  CD007_RS06655 (CD007_06655) yjpA 1278254..1278511 (-) 258 WP_003232731.1 YciI family protein -
  CD007_RS06660 (CD007_06660) xlyB 1278632..1279585 (+) 954 WP_041850941.1 N-acetylmuramoyl-L-alanine amidase -
  CD007_RS06665 (CD007_06665) yjqA 1279625..1280002 (-) 378 WP_041850940.1 PH domain-containing protein -
  CD007_RS06670 (CD007_06670) pghB 1280107..1280709 (+) 603 WP_038828723.1 poly-gamma-glutamate hydrolase family protein -
  CD007_RS06675 (CD007_06675) xpdC 1280786..1281622 (+) 837 WP_003245071.1 manganese catalase family protein -
  CD007_RS06680 (CD007_06680) xkdA 1281666..1282262 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  CD007_RS06685 (CD007_06685) xre 1282425..1282766 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=198112 CD007_RS06645 WP_015252291.1 1276963..1278099(+) (rapC) [Bacillus subtilis strain ge28]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=198112 CD007_RS06645 WP_015252291.1 1276963..1278099(+) (rapC) [Bacillus subtilis strain ge28]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418