Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   BI283_RS05000 Genome accession   NZ_CP017430
Coordinates   1093528..1094571 (+) Length   347 a.a.
NCBI ID   WP_002481663.1    Uniprot ID   -
Organism   Staphylococcus simulans strain MR4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1088528..1099571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI283_RS04975 (BI283_04945) - 1089531..1090250 (+) 720 WP_105966989.1 glutamine amidotransferase -
  BI283_RS04980 (BI283_04950) - 1090333..1091319 (-) 987 WP_002481667.1 aromatic acid exporter family protein -
  BI283_RS04985 (BI283_04955) map 1091539..1092303 (+) 765 WP_060803962.1 type I methionyl aminopeptidase -
  BI283_RS04990 (BI283_04960) - 1092419..1092814 (+) 396 WP_002481665.1 hypothetical protein -
  BI283_RS04995 (BI283_04965) liaF 1092830..1093531 (+) 702 WP_002481664.1 cell wall-active antibiotics response protein LiaF -
  BI283_RS05000 (BI283_04970) vraS 1093528..1094571 (+) 1044 WP_002481663.1 sensor histidine kinase Regulator
  BI283_RS05005 (BI283_04975) vraR 1094561..1095190 (+) 630 WP_002481662.1 response regulator transcription factor Regulator
  BI283_RS05010 (BI283_04980) - 1095261..1095839 (-) 579 WP_002481661.1 carbonic anhydrase -
  BI283_RS05015 (BI283_04985) - 1096047..1097123 (-) 1077 WP_002481660.1 YihY/virulence factor BrkB family protein -
  BI283_RS05020 (BI283_04990) - 1097254..1097544 (-) 291 WP_002481659.1 hypothetical protein -
  BI283_RS05025 (BI283_04995) - 1097552..1098016 (-) 465 WP_023015860.1 low molecular weight protein-tyrosine-phosphatase -
  BI283_RS05030 (BI283_05000) - 1098240..1098446 (+) 207 WP_002481657.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39897.15 Da        Isoelectric Point: 4.8944

>NTDB_id=198057 BI283_RS05000 WP_002481663.1 1093528..1094571(+) (vraS) [Staphylococcus simulans strain MR4]
MNHYIRAIGSMLILNYSILAIFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNIIVILMSIIVGSVLAYKVNEQNDWIKT
QIEHSIEGEVVGINDQNIELYQETLDIYHTLVPLNQELHRLRIKTQDLTNETYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESPLEPPLDQQIPTLEKMVQDSQLEMRALLLHLRPLGLKDRSLGEGIKDLVVDLQKKVPMKVVYDI
EDFEVPKGIEDHLFRITQEGISNTLRHAEGTKLTIDLFNKDDYLLLRIQDDGKGFDVDEKMEKSYGLKNMRERALEIGAT
LHIVSLPGAGTRIEVKAPLNKEENDGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=198057 BI283_RS05000 WP_002481663.1 1093528..1094571(+) (vraS) [Staphylococcus simulans strain MR4]
ATGAACCACTATATCAGAGCCATCGGTTCGATGCTGATATTGAACTATAGTATATTAGCGATTTTCTTTTTTATAGACAA
AGTATTCGTCAACATCATCTACTTTCAAGGAATGTTTTATACGCAGATTTTCGGCATTCCTGTTTTCTTATTTTTAAATA
TTATAGTGATTTTGATGAGTATTATTGTTGGTTCTGTGTTAGCGTATAAAGTGAACGAACAAAATGATTGGATTAAAACA
CAAATTGAACATTCCATTGAAGGGGAAGTTGTCGGTATTAATGATCAAAATATCGAACTCTACCAAGAAACTTTGGATAT
CTATCATACACTTGTGCCATTAAACCAAGAATTACATCGACTACGTATTAAAACACAAGATTTGACCAACGAAACATATA
ATTTAAATGACGTTAAAGTGAAGAAAATTATAGAAGATGAACGCCAGCGTTTAGCTAGGGAATTGCATGATTCAGTTAGT
CAGCAATTATTTGCGGCAAGTATGATGTTATCGGCGATTAAGGAATCACCACTTGAACCGCCGCTTGATCAGCAAATTCC
GACACTAGAAAAGATGGTACAAGATTCGCAACTAGAAATGCGTGCATTGTTATTACATTTAAGACCGCTTGGCTTAAAAG
ATCGCTCACTTGGGGAAGGAATTAAAGATCTTGTTGTGGACTTACAAAAGAAAGTGCCTATGAAAGTAGTTTATGATATT
GAAGACTTTGAGGTACCAAAAGGCATAGAAGATCATTTATTCCGTATCACCCAAGAAGGGATTTCCAATACACTGCGACA
TGCAGAAGGCACAAAATTAACGATAGATTTATTTAATAAAGATGATTATCTGTTATTGCGTATTCAAGATGATGGTAAAG
GCTTTGATGTAGATGAAAAAATGGAGAAAAGCTATGGATTGAAGAATATGCGAGAGCGAGCATTAGAAATCGGGGCAACA
CTGCATATTGTTTCTTTGCCTGGGGCAGGGACAAGAATTGAAGTGAAGGCTCCATTGAATAAGGAGGAAAATGATGGCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

86.167

100

0.862


Multiple sequence alignment