Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   S100333_RS19425 Genome accession   NZ_CP021892
Coordinates   3651470..3652603 (-) Length   377 a.a.
NCBI ID   WP_088272543.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3646470..3657603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS19385 (S100333_03955) ywnA 3646598..3646999 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  S100333_RS19390 (S100333_03956) ureC 3647134..3648843 (-) 1710 WP_003243090.1 urease subunit alpha -
  S100333_RS19395 (S100333_03957) ureB 3648840..3649214 (-) 375 WP_003227726.1 urease subunit beta -
  S100333_RS19400 (S100333_03958) ureA 3649211..3649528 (-) 318 WP_014478236.1 urease subunit gamma -
  S100333_RS22455 - 3649722..3649844 (-) 123 WP_250615389.1 hypothetical protein -
  S100333_RS19410 (S100333_03959) - 3650091..3650273 (-) 183 WP_069837820.1 transporter substrate-binding protein -
  S100333_RS19415 (S100333_03960) csbD 3650574..3650762 (-) 189 WP_014481173.1 stress response protein CsbD -
  S100333_RS19420 (S100333_03961) - 3650835..3651314 (-) 480 WP_026113664.1 hypothetical protein -
  S100333_RS19425 (S100333_03962) rapC 3651470..3652603 (-) 1134 WP_088272543.1 response regulator aspartate phosphatase RapB Regulator
  S100333_RS19435 (S100333_03963) moaA 3652795..3653820 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  S100333_RS19440 (S100333_03964) fdhD 3653836..3654624 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  S100333_RS19445 (S100333_03965) - 3654726..3654887 (-) 162 WP_003227706.1 hypothetical protein -
  S100333_RS19450 (S100333_03966) ywmD 3654982..3655656 (-) 675 WP_041334709.1 VWA domain-containing protein -
  S100333_RS22460 - 3655709..3655849 (-) 141 WP_014481180.1 hypothetical protein -
  S100333_RS19460 (S100333_03967) ywmC 3655980..3656663 (-) 684 WP_041334706.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45060.18 Da        Isoelectric Point: 4.7546

>NTDB_id=198047 S100333_RS19425 WP_088272543.1 3651470..3652603(-) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=198047 S100333_RS19425 WP_088272543.1 3651470..3652603(-) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424