Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BI380_RS21360 Genome accession   NZ_CP017420
Coordinates   4607215..4608831 (-) Length   538 a.a.
NCBI ID   WP_016450698.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain CM13     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4602215..4613831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI380_RS21345 (BI380_21345) - 4603176..4603673 (-) 498 WP_046239904.1 hypothetical protein -
  BI380_RS21350 (BI380_21350) - 4603730..4604869 (-) 1140 WP_046239905.1 slipin family protein -
  BI380_RS21355 (BI380_21355) rtcR 4605568..4607193 (+) 1626 WP_046239906.1 RNA repair transcriptional activator RtcR -
  BI380_RS21360 (BI380_21360) rpoN/rpoN1 4607215..4608831 (-) 1617 WP_016450698.1 RNA polymerase factor sigma-54 Machinery gene
  BI380_RS21365 (BI380_21365) lptB 4608886..4609683 (-) 798 WP_016450697.1 LPS export ABC transporter ATP-binding protein -
  BI380_RS21370 (BI380_21370) lptA 4609680..4610342 (-) 663 WP_046987249.1 lipopolysaccharide transport periplasmic protein LptA -
  BI380_RS21375 (BI380_21375) - 4610515..4611165 (-) 651 WP_016450695.1 thiol:disulfide interchange protein DsbA/DsbL -
  BI380_RS21380 (BI380_21380) - 4611247..4611927 (-) 681 WP_070080759.1 SPOR domain-containing protein -
  BI380_RS21385 (BI380_21385) argS 4611948..4613645 (-) 1698 WP_016450693.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59239.28 Da        Isoelectric Point: 4.5784

>NTDB_id=198015 BI380_RS21360 WP_016450698.1 4607215..4608831(-) (rpoN/rpoN1) [Delftia tsuruhatensis strain CM13]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANDDGDHEAASSAPEPAAPGADAADSFQESR
ADQPSAAVEWEAPSDTSSGDAAETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGDDDETDATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGDGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREAMVLIARLEPRPGRR
FADVQRQIVVPDVIVRPVRMGAGRMEFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPRKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=198015 BI380_RS21360 WP_016450698.1 4607215..4608831(-) (rpoN/rpoN1) [Delftia tsuruhatensis strain CM13]
TTGAAGCCCGGACTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACCCCGCAACTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCTTGGAGCTGGCGAACGACGACG
GCGACCACGAAGCGGCAAGCAGCGCCCCGGAGCCTGCGGCGCCCGGCGCCGACGCCGCGGACTCCTTCCAGGAAAGCCGT
GCGGACCAGCCATCGGCTGCGGTGGAATGGGAGGCGCCGTCGGACACATCCTCCGGCGATGCCGCCGAGACCTCTGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGATGGCCAGACCAACTCGGGCAACGACGACCGCGACTGGGGCAGCGATGCGCCTT
CCAGCCGCACGCGCGGCCAGGGTGACGATGACGAGACCGATGCCACCGAGCTGGCACGCAGCGCAGAAAGCCTGACCGAC
CATCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGATCGTGCCGCGCTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGACCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGTTGCGCCTGTTGCAAAGCCTGGAGCCGGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAGCTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCGACGGCAGTGCCGAGGACGAAGATCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGTGACCTGCGCAAGCTCGCCA
GCCTGTGCGGCGCGCGCGAGGAGCGGCTGCGCGAGGCGATGGTCCTGATCGCCCGGCTGGAGCCGCGCCCGGGCCGGCGC
TTCGCCGACGTGCAGCGCCAGATCGTCGTGCCCGATGTCATCGTGCGCCCGGTGCGCATGGGTGCGGGACGCATGGAGTT
CAGCGTGCAACTCAACCCCGATGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACCGGG
GCAGCGAAGGCCATGCGGCGTTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAATCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAGGCGGGCGGCAACGCGTCGAGCACG
GCCGTGCGCGCGCTCATCAAGCAGTTCGTCGCAGCCGAGGACCCCAGGAAGCCGCTGTCGGACAACCAGCTCGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACGGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.515

Multiple sequence alignment