Detailed information NTG0198007

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BI380_RS15660
• Genome accession: NZ_CP017420
• Coordinates: 3353466..3354686 (+)
• Length: 406 a.a.
• NCBI ID: WP_070080629.1
• Uniprot ID: -
• Organism: Delftia tsuruhatensis strain CM13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3348466..3359686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BI380_RS15640 (BI380_15640)	coaD	3349236..3349736 (-)	501	WP_016449072.1	pantetheine-phosphate adenylyltransferase	-
BI380_RS15645 (BI380_15645)	rsmD	3349867..3350574 (-)	708	WP_070080628.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BI380_RS15650 (BI380_15650)	-	3350571..3351932 (-)	1362	WP_046241665.1	M16 family metallopeptidase	-
BI380_RS15655 (BI380_15655)	-	3351959..3353437 (-)	1479	WP_016449075.1	M16 family metallopeptidase	-
BI380_RS15660 (BI380_15660)	pilA	3353466..3354686 (+)	1221	WP_070080629.1	signal recognition particle-docking protein FtsY	Machinery gene
BI380_RS33365	-	3355619..3356356 (+)	738	WP_236884697.1	GntR family transcriptional regulator	-
BI380_RS15670 (BI380_15670)	-	3356881..3357810 (+)	930	WP_016454141.1	DMT family transporter	-
BI380_RS15675 (BI380_15675)	-	3358134..3359123 (+)	990	WP_046238856.1	Bug family tripartite tricarboxylate transporter substrate binding protein	-
BI380_RS15680 (BI380_15680)	cutA	3359110..3359508 (-)	399	WP_046238855.1	divalent-cation tolerance protein CutA	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 42462.34 Da
• Isoelectric Point: 5.5295

>NTDB_id=198007 BI380_RS15660 WP_070080629.1 3353466..3354686(+) (pilA) [Delftia tsuruhatensis strain CM13]
MFSFFKKKPTPSSAEISPADSSAAPEEAGIPATPPQDRAPDLPPGTPAPPAAADTGSAWWRKPFGGGKGDAAPPAAPAAP
TAAASTLAPADFIAAPEPTAKPEAEGASRQNWMQRLKAGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATEH
LLTELRRRVKEAKATDPAAVKALLADALADLLRPLEKPLIIGEHQPTVVMVAGVNGAGKTTSIGKLTKHLADEGQSVLLA
AADTFRAAAREQLGVWANRNTVEIVSQEGGDPAAVSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVTKAD
ATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREF
AQALLS

Nucleotide

• Length: 1221 bp

>NTDB_id=198007 BI380_RS15660 WP_070080629.1 3353466..3354686(+) (pilA) [Delftia tsuruhatensis strain CM13]
ATGTTCAGTTTTTTCAAGAAAAAGCCCACCCCCTCCTCCGCCGAGATTTCCCCGGCGGACAGCAGCGCCGCGCCTGAAGA
GGCCGGCATTCCCGCAACCCCGCCGCAGGACCGCGCCCCAGACCTGCCCCCTGGCACGCCTGCCCCACCGGCCGCAGCCG
ACACCGGCAGCGCCTGGTGGCGCAAGCCCTTCGGCGGCGGCAAGGGCGATGCCGCCCCGCCTGCCGCACCCGCTGCACCC
ACTGCTGCTGCTTCCACGCTCGCGCCTGCCGACTTCATTGCCGCACCCGAGCCCACGGCCAAGCCCGAAGCCGAAGGCGC
CAGCCGCCAGAACTGGATGCAGCGCCTCAAGGCCGGACTGCGCAAGACCGGCAGCAGCATCGCCACGGTCTTCACCGGCA
CGCAGATCAACGATGCGCTGTACGAAGAGCTGGAAGACGCCCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCAC
CTGCTCACCGAACTGCGCCGCCGCGTCAAGGAAGCCAAGGCCACCGACCCTGCAGCCGTCAAGGCCCTGCTGGCCGATGC
ACTGGCCGACCTGCTGCGCCCGCTGGAAAAGCCGCTGATCATCGGCGAGCACCAGCCTACCGTGGTCATGGTCGCTGGCG
TCAACGGCGCAGGCAAGACCACCTCCATCGGCAAGCTGACCAAGCATCTGGCCGACGAAGGCCAGAGCGTGCTGCTGGCT
GCCGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTCGGCGTCTGGGCCAACCGCAACACGGTGGAGATCGTCAGCCA
GGAAGGCGGTGATCCTGCAGCCGTGAGCTTTGATGCCGTCACCGCCGGCCGCGCCCGCAAGAAGGATGTGGTGCTGGTGG
ACACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGATGGAAGAGCTGCGCAAGATCCGCCGCGTGGTCACCAAGGCCGAT
GCCACGGCACCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTGCGCGCCTTTGA
CGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATTGCCC
AGGAACGGCCGATCCCCGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAAGACCTGGAGACCTTCAACGCCAGGGAATTC
GCGCAGGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (125-188)

• SRP54-type protein, GTPase domain (SRP54) (206-405)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.991	100	0.5