Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BI364_RS07265 Genome accession   NZ_CP017415
Coordinates   1517074..1517538 (+) Length   154 a.a.
NCBI ID   WP_070078174.1    Uniprot ID   A0A1D8IMU2
Organism   Acidihalobacter yilgarnensis strain F5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1512074..1522538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI364_RS17835 - 1512619..1512852 (+) 234 WP_156782653.1 hypothetical protein -
  BI364_RS07255 (BI364_07255) - 1512966..1515866 (+) 2901 WP_083251225.1 ribonucleoside-diphosphate reductase subunit alpha -
  BI364_RS07260 (BI364_07260) - 1516324..1516776 (+) 453 WP_070078173.1 hypothetical protein -
  BI364_RS07265 (BI364_07265) ssb 1517074..1517538 (+) 465 WP_070078174.1 single-stranded DNA-binding protein Machinery gene
  BI364_RS07270 (BI364_07270) - 1517581..1518549 (+) 969 WP_083251226.1 RecT family recombinase -
  BI364_RS18295 (BI364_07275) - 1518713..1519150 (+) 438 WP_070078176.1 hypothetical protein -
  BI364_RS17315 (BI364_07280) - 1519065..1520177 (+) 1113 WP_197495934.1 toprim domain-containing protein -
  BI364_RS07285 (BI364_07285) - 1520180..1520446 (+) 267 WP_156782654.1 hypothetical protein -
  BI364_RS07290 (BI364_07290) - 1520470..1520691 (+) 222 WP_145930829.1 hypothetical protein -
  BI364_RS07295 (BI364_07295) - 1520662..1521900 (-) 1239 WP_070078179.1 hypothetical protein -
  BI364_RS07300 (BI364_07300) - 1521904..1522470 (-) 567 WP_070078180.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16879.83 Da        Isoelectric Point: 6.2372

>NTDB_id=197987 BI364_RS07265 WP_070078174.1 1517074..1517538(+) (ssb) [Acidihalobacter yilgarnensis strain F5]
MQMVIALGNLGKDPEIRYSQSGMPVANVSLACSEKWTDKQSGEQVEKTEWLNLVAFGRTAEIMGEYLKKGSKIFIQGKLQ
TDKYEKDGQTRYVTKVVVRSMQMLGQPSGGNGNDGEKHRGANQQNSRSAPQPAHAGHSADSGAPDFDFDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=197987 BI364_RS07265 WP_070078174.1 1517074..1517538(+) (ssb) [Acidihalobacter yilgarnensis strain F5]
ATGCAAATGGTCATTGCACTCGGAAACCTCGGAAAGGACCCCGAGATCCGTTACTCACAAAGCGGCATGCCGGTCGCGAA
TGTGTCGCTCGCCTGCAGCGAGAAATGGACGGACAAACAGTCCGGAGAACAGGTCGAGAAGACCGAATGGCTCAATCTCG
TTGCGTTCGGACGCACAGCCGAAATCATGGGTGAATATCTCAAGAAAGGTTCGAAGATATTCATTCAAGGCAAGCTGCAG
ACCGACAAGTACGAGAAGGACGGCCAGACCCGATATGTGACAAAGGTTGTCGTTAGATCCATGCAGATGCTTGGCCAGCC
GTCGGGTGGTAATGGCAACGACGGTGAGAAGCACCGCGGAGCGAATCAGCAAAATTCGCGTTCGGCGCCTCAGCCCGCCC
ATGCCGGTCATTCGGCCGATTCCGGCGCTCCGGATTTCGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8IMU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.562

100

0.5
  ssb Glaesserella parasuis strain SC1401

40.571

100

0.461
  ssb Neisseria meningitidis MC58

39.884

100

0.448
  ssb Neisseria gonorrhoeae MS11

39.306

100

0.442
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.065

100

0.383

Multiple sequence alignment