Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   S100333_RS10055 Genome accession   NZ_CP021892
Coordinates   1908816..1910819 (+) Length   667 a.a.
NCBI ID   WP_014476936.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903816..1915819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS10015 (S100333_02050) pghL 1904182..1904940 (+) 759 WP_088272354.1 gamma-polyglutamate hydrolase PghL -
  S100333_RS10020 (S100333_02051) - 1904967..1905416 (-) 450 WP_014479935.1 YndM family protein -
  S100333_RS10025 (S100333_02052) fosM 1905625..1906044 (+) 420 WP_014479937.1 FosM family fosfomycin resistance protein -
  S100333_RS22815 - 1905968..1906307 (+) 340 Protein_1927 hypothetical protein -
  S100333_RS10035 (S100333_02053) dinR/lexA 1906594..1907211 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  S100333_RS10040 (S100333_02054) yneA 1907361..1907678 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  S100333_RS10045 (S100333_02055) dinL 1907697..1908350 (+) 654 WP_014479938.1 recombinase family protein -
  S100333_RS10050 (S100333_02056) ynzC 1908414..1908647 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  S100333_RS10055 (S100333_02057) recP/tkt 1908816..1910819 (+) 2004 WP_014476936.1 transketolase Machinery gene
  S100333_RS10060 (S100333_02058) sirA 1910972..1911418 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  S100333_RS10065 (S100333_02059) yneF 1911504..1911722 (+) 219 WP_003221221.1 YneF family protein -
  S100333_RS10070 (S100333_02060) ynzD 1911796..1911969 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  S100333_RS10075 (S100333_02061) ccdA 1912189..1912896 (+) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  S100333_RS10080 (S100333_02062) yneI 1912985..1913347 (+) 363 WP_003245707.1 response regulator -
  S100333_RS10085 (S100333_02063) yneJ 1913426..1913917 (+) 492 WP_010886519.1 CcdC family protein -
  S100333_RS10090 (S100333_02064) yneK 1913948..1914376 (-) 429 WP_003231580.1 DynA interaction protein YneK -
  S100333_RS10095 (S100333_02065) cotM 1914610..1915002 (-) 393 WP_072592538.1 outer spore coat protein CotM -
  S100333_RS10100 (S100333_02066) sspP 1915083..1915229 (-) 147 WP_003221237.1 small acid-soluble spore protein P -
  S100333_RS10105 (S100333_02067) sspO 1915261..1915407 (-) 147 WP_003244839.1 acid-soluble spore protein SspO -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72300.39 Da        Isoelectric Point: 4.7291

>NTDB_id=197987 S100333_RS10055 WP_014476936.1 1908816..1910819(+) (recP/tkt) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTAEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=197987 S100333_RS10055 WP_014476936.1 1908816..1910819(+) (recP/tkt) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAGGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGCCTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAGTTTGCGATGGGTGCAGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACAGCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATTGCCTCCGGA
TCCGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACAGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCAGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562

Multiple sequence alignment