Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   S100333_RS07925 Genome accession   NZ_CP021892
Coordinates   1509222..1509797 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504222..1514797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS07895 (S100333_01621) dapD 1504410..1505120 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  S100333_RS07900 (S100333_01622) dapI 1505190..1506314 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  S100333_RS07905 (S100333_01623) ykuS 1506376..1506621 (+) 246 WP_003232382.1 YkuS family protein -
  S100333_RS07910 (S100333_01624) mscT 1506658..1507461 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  S100333_RS07915 (S100333_01625) ahpA 1507698..1508240 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  S100333_RS07920 (S100333_01626) ykuV 1508310..1508756 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  S100333_RS07925 (S100333_01627) rok 1509222..1509797 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  S100333_RS07935 (S100333_01630) cse15 1511128..1512093 (-) 966 WP_014479669.1 spore protein Cse15 -
  S100333_RS07940 (S100333_01631) mobA 1512230..1512829 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  S100333_RS07945 (S100333_01632) moeB 1512880..1513899 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=197969 S100333_RS07925 WP_003232378.1 1509222..1509797(+) (rok) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=197969 S100333_RS07925 WP_003232378.1 1509222..1509797(+) (rok) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1