Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   S100333_RS06985 Genome accession   NZ_CP021892
Coordinates   1337480..1338616 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332480..1343616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS06960 (S100333_01428) - 1332667..1334019 (+) 1353 WP_014478984.1 IS1182 family transposase -
  S100333_RS06965 (S100333_01430) bstD 1334162..1334626 (-) 465 WP_014479541.1 DinB family protein -
  S100333_RS06970 (S100333_01432) yjoB 1334775..1335875 (+) 1101 Protein_1315 ATPase YjoB -
  S100333_RS06980 - 1337162..1337335 (+) 174 Protein_1317 ATPase -
  S100333_RS06985 (S100333_01435) rapC 1337480..1338616 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  S100333_RS06990 (S100333_01436) phrA 1338606..1338740 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  S100333_RS06995 (S100333_01437) yjpA 1338771..1339017 (-) 247 Protein_1320 YciI family protein -
  S100333_RS07000 (S100333_01438) xlyB 1339138..1340091 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  S100333_RS07005 (S100333_01439) yjqA 1340131..1340508 (-) 378 WP_014479546.1 PH domain-containing protein -
  S100333_RS07010 (S100333_01440) pghB 1340613..1341215 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  S100333_RS07015 (S100333_01441) xpdC 1341292..1342128 (+) 837 WP_003245071.1 manganese catalase family protein -
  S100333_RS07020 (S100333_01442) xkdA 1342172..1342768 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  S100333_RS07025 (S100333_01443) xre 1342931..1343272 (-) 342 WP_017695142.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=197961 S100333_RS06985 WP_015252291.1 1337480..1338616(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=197961 S100333_RS06985 WP_015252291.1 1337480..1338616(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418