Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   S100333_RS04255 Genome accession   NZ_CP021892
Coordinates   830325..831041 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 825325..836041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS04235 - 826231..826503 (-) 273 Protein_787 spore gernimation protein -
  S100333_RS04240 (S100333_00872) - 826765..826944 (-) 180 Protein_788 spore germination protein -
  S100333_RS04245 (S100333_00873) treP 827133..828545 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  S100333_RS04250 (S100333_00874) treC 828616..830304 (+) 1689 WP_088272233.1 alpha,alpha-phosphotrehalase -
  S100333_RS04255 (S100333_00875) treR 830325..831041 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  S100333_RS04260 (S100333_00876) hypO 831181..831846 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=197938 S100333_RS04255 WP_003233679.1 830325..831041(+) (treR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=197938 S100333_RS04255 WP_003233679.1 830325..831041(+) (treR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAACTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGGAAGATTGACG
GGGAACATGTGATTTTGGACAAGGACTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416