Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   S100333_RS03790 Genome accession   NZ_CP021892
Coordinates   738474..739604 (+) Length   376 a.a.
NCBI ID   WP_088272212.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 733474..744604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS03765 (S100333_00776) - 733839..734105 (-) 267 WP_017695620.1 hypothetical protein -
  S100333_RS03770 - 734172..734370 (-) 199 Protein_693 hypothetical protein -
  S100333_RS03775 (S100333_00778) atxF 734611..735066 (-) 456 WP_072557181.1 TIGR01741 family protein -
  S100333_RS03780 (S100333_00779) yeeF 735086..737095 (-) 2010 WP_088272210.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  S100333_RS03785 (S100333_00780) - 737308..738330 (+) 1023 WP_088272211.1 hypothetical protein -
  S100333_RS03790 (S100333_00781) rapC 738474..739604 (+) 1131 WP_088272212.1 response regulator aspartate phosphatase RapH Regulator
  S100333_RS03795 (S100333_00782) phrH 739594..739767 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  S100333_RS03800 (S100333_00783) yeeI 739927..740646 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  S100333_RS03805 (S100333_00784) - 740780..741388 (+) 609 WP_088272213.1 spore coat protein -
  S100333_RS03810 (S100333_00785) yezE 741503..742087 (+) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  S100333_RS03815 (S100333_00786) cotJA 742264..742512 (+) 249 WP_014479094.1 spore coat-associated protein CotJA -
  S100333_RS03820 (S100333_00787) cotJB 742496..742759 (+) 264 WP_014479095.1 spore coat protein CotJB -
  S100333_RS03825 (S100333_00788) cotJC 742774..743343 (+) 570 WP_014479096.1 spore coat protein CotJC -
  S100333_RS03830 (S100333_00789) yesJ 743468..744010 (+) 543 WP_014479097.1 GNAT family N-acetyltransferase -
  S100333_RS03835 yesK 744033..744335 (+) 303 Protein_706 YesK-like family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44044.42 Da        Isoelectric Point: 5.9937

>NTDB_id=197937 S100333_RS03790 WP_088272212.1 738474..739604(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=197937 S100333_RS03790 WP_088272212.1 738474..739604(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCAGAGATTCTGAAAGCAGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402