Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   S100333_RS02945 Genome accession   NZ_CP021892
Coordinates   561533..562171 (+) Length   212 a.a.
NCBI ID   WP_088272177.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556533..567171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS02925 (S100333_00598) ydfD 556842..558290 (+) 1449 WP_014478966.1 PLP-dependent aminotransferase family protein -
  S100333_RS02930 (S100333_00599) - 558358..559800 (-) 1443 WP_014478967.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  S100333_RS02935 (S100333_00600) ydfE 559921..560544 (-) 624 WP_069837276.1 flavin reductase family protein -
  S100333_RS02940 (S100333_00601) ydfF 560634..561314 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  S100333_RS22225 (S100333_00602) - 561373..561540 (+) 168 Protein_531 sensor histidine kinase -
  S100333_RS02945 (S100333_00603) vraR 561533..562171 (+) 639 WP_088272177.1 two-component system response regulator YdfI Regulator
  S100333_RS02950 (S100333_00604) pleJ 562287..564461 (+) 2175 WP_033881069.1 MMPL family transporter -
  S100333_RS02955 (S100333_00605) cesA 564872..565774 (-) 903 WP_014478976.1 carboxylesterase -
  S100333_RS02960 (S100333_00606) ydfK 565977..566666 (-) 690 WP_019712443.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23831.77 Da        Isoelectric Point: 5.4183

>NTDB_id=197935 S100333_RS02945 WP_088272177.1 561533..562171(+) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MNKVLIVDDHLVVREGLKLLIETNDQYSIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLEIQFERMKKQRNETQLTEKEVIVLKAIA
KGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 639 bp        

>NTDB_id=197935 S100333_RS02945 WP_088272177.1 561533..562171(+) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CTCCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTAGAAA
TCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATTGCT
AAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCATTTA
CAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.667

99.057

0.363