Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   S100333_RS02420 Genome accession   NZ_CP021892
Coordinates   472381..472815 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 467381..477815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS02390 (S100333_00492) ydaD 468028..468888 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  S100333_RS02395 (S100333_00493) lyxE 468904..469407 (+) 504 WP_088272170.1 D-lyxose ketol-isomerase -
  S100333_RS02400 (S100333_00494) ydaF 469496..470047 (+) 552 WP_041337761.1 GNAT family protein -
  S100333_RS02405 (S100333_00495) ydaG 470125..470547 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  S100333_RS02410 (S100333_00496) amj 471052..471861 (+) 810 WP_041336819.1 lipid II flippase Amj -
  S100333_RS02415 (S100333_00497) ydzA 471906..472196 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  S100333_RS02420 (S100333_00498) lrpC 472381..472815 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  S100333_RS02425 (S100333_00499) topB 472880..475063 (+) 2184 WP_088272171.1 DNA topoisomerase III -
  S100333_RS02430 (S100333_00500) mutT 475176..475625 (+) 450 WP_046160069.1 8-oxo-dGTP diphosphatase MutT -
  S100333_RS02435 (S100333_00501) poxB 475692..477416 (+) 1725 WP_046160070.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=197934 S100333_RS02420 WP_003246585.1 472381..472815(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=197934 S100333_RS02420 WP_003246585.1 472381..472815(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment