Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   S100333_RS00335 Genome accession   NZ_CP021892
Coordinates   60948..61178 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55948..66178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS00305 (S100333_00061) ridA 56111..56488 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  S100333_RS00310 (S100333_00062) spoVG 56683..56976 (+) 294 WP_003218346.1 septation regulator SpoVG -
  S100333_RS00315 (S100333_00063) glmU 57169..58539 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  S100333_RS00320 (S100333_00064) prsS 58562..59515 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  S100333_RS00325 (S100333_00065) rplYB 59601..60215 (+) 615 WP_043940261.1 50S ribosomal protein L25/general stress protein Ctc -
  S100333_RS00330 (S100333_00066) pth 60322..60888 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  S100333_RS00335 (S100333_00067) subA/fin 60948..61178 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  S100333_RS00340 (S100333_00068) mfd 61248..64781 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  S100333_RS00345 (S100333_00069) spoVT 64917..65453 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=197919 S100333_RS00335 WP_003243417.1 60948..61178(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=197919 S100333_RS00335 WP_003243417.1 60948..61178(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment