Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   S100761_RS08530 Genome accession   NZ_CP021889
Coordinates   1608076..1609101 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis subsp. subtilis strain SRCM100761     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603076..1614101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100761_RS08495 (S100761_01688) ylbE 1603376..1603615 (+) 240 WP_003232231.1 YlbE-like family protein -
  S100761_RS08500 (S100761_01689) ylbF 1603731..1604180 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  S100761_RS08505 (S100761_01690) ylbG 1604235..1604507 (+) 273 WP_009967171.1 YlbG family protein -
  S100761_RS08510 (S100761_01691) rsmD 1604830..1605384 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S100761_RS08515 (S100761_01692) coaD 1605389..1605874 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  S100761_RS08520 (S100761_01693) spoVV 1605885..1607111 (-) 1227 WP_087614544.1 dipicolinic acid transporter SpoVV -
  S100761_RS08525 (S100761_01694) ylbK 1607292..1608074 (+) 783 WP_003232221.1 patatin family protein -
  S100761_RS08530 (S100761_01695) sepM 1608076..1609101 (+) 1026 WP_003245451.1 protease DdcP Regulator
  S100761_RS08535 (S100761_01696) tmcAL 1609118..1610365 (-) 1248 WP_087614545.1 nucleotidyltransferase -
  S100761_RS08540 (S100761_01697) - 1610362..1610547 (-) 186 WP_003232215.1 hypothetical protein -
  S100761_RS08545 (S100761_01698) ylbN 1610575..1611093 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  S100761_RS08550 (S100761_01699) rpmF 1611115..1611294 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  S100761_RS08555 (S100761_01700) gerR 1611440..1612021 (+) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  S100761_RS08560 (S100761_01701) ylbP 1612078..1612560 (-) 483 WP_014476736.1 N-acetyltransferase -
  S100761_RS08565 (S100761_01702) panEA 1612720..1613616 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=197827 S100761_RS08530 WP_003245451.1 1608076..1609101(+) (sepM) [Bacillus subtilis subsp. subtilis strain SRCM100761]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=197827 S100761_RS08530 WP_003245451.1 1608076..1609101(+) (sepM) [Bacillus subtilis subsp. subtilis strain SRCM100761]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGGGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGATGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402