Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   S100761_RS07105 Genome accession   NZ_CP021889
Coordinates   1347943..1349079 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100761     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342943..1354079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100761_RS07085 (S100761_01406) uxaA 1343399..1344892 (+) 1494 WP_014479540.1 altronate dehydratase family protein -
  S100761_RS07090 (S100761_01407) yjnA 1344931..1345695 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  S100761_RS07095 (S100761_01408) bstD 1345914..1346378 (-) 465 WP_014479541.1 DinB family protein -
  S100761_RS07100 (S100761_01409) yjoB 1346527..1347798 (+) 1272 WP_003245490.1 ATPase YjoB -
  S100761_RS07105 (S100761_01410) rapC 1347943..1349079 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  S100761_RS07110 (S100761_01411) phrA 1349069..1349203 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  S100761_RS07115 (S100761_01412) yjpA 1349234..1349480 (-) 247 Protein_1340 YciI family protein -
  S100761_RS07120 (S100761_01413) xlyB 1349601..1350554 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  S100761_RS07125 (S100761_01414) yjqA 1350594..1350971 (-) 378 WP_014479546.1 PH domain-containing protein -
  S100761_RS07130 (S100761_01415) pghB 1351076..1351678 (+) 603 WP_087614515.1 poly-gamma-glutamate hydrolase family protein -
  S100761_RS07135 (S100761_01416) xpdC 1351755..1352591 (+) 837 WP_003245071.1 manganese catalase family protein -
  S100761_RS07140 (S100761_01417) xkdA 1352635..1353231 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  S100761_RS07145 (S100761_01418) xre 1353394..1353735 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=197817 S100761_RS07105 WP_015252291.1 1347943..1349079(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100761]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=197817 S100761_RS07105 WP_015252291.1 1347943..1349079(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM100761]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418