Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WSWS_RS06650 Genome accession   NZ_CP017326
Coordinates   1371706..1373076 (-) Length   456 a.a.
NCBI ID   WP_070230536.1    Uniprot ID   A0A288QV07
Organism   Weissella soli strain KACC 11848     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1366706..1378076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WSWS_RS06635 (WSWS_01342) pheS 1367637..1368677 (-) 1041 WP_070230533.1 phenylalanine--tRNA ligase subunit alpha -
  WSWS_RS06640 (WSWS_01343) gltX 1368969..1370468 (-) 1500 WP_070230534.1 glutamate--tRNA ligase -
  WSWS_RS06645 (WSWS_01344) - 1370575..1371687 (-) 1113 WP_070230535.1 PIN/TRAM domain-containing protein -
  WSWS_RS06650 (WSWS_01345) radA 1371706..1373076 (-) 1371 WP_070230536.1 DNA repair protein RadA Machinery gene
  WSWS_RS06655 (WSWS_01346) - 1373076..1373612 (-) 537 WP_070230537.1 dUTP diphosphatase -
  WSWS_RS06660 (WSWS_01347) - 1373730..1374014 (-) 285 WP_070230538.1 GNAT family N-acetyltransferase -
  WSWS_RS06665 (WSWS_01348) - 1374029..1374577 (-) 549 WP_070230539.1 NlpC/P60 family protein -
  WSWS_RS06670 (WSWS_01349) - 1374716..1375567 (-) 852 WP_070230540.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49356.51 Da        Isoelectric Point: 5.5453

>NTDB_id=197738 WSWS_RS06650 WP_070230536.1 1371706..1373076(-) (radA) [Weissella soli strain KACC 11848]
MAKTRTQFICSNCGYVSQRYMGRCSNCGAWGTLVEEVIRPEGSDRKSRVNLAGQVAKVEHLGDVSIEDTPRVATQYEEFN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGHLATVGTVLYVTGEESASQVKLRAERLGVHDDANFYLYPETDMGQIRK
AIDELNPDYVIIDSIQTMQQPDIQSAVGSVAQIRETTAELLQIAKSNGITIFIVGHVTKEGTIAGPKILEHMVDTVLYFE
GDNQRSFRLLRAVKNRFGSTNELGIFEMVQDGLTEVTNPSEMFLEERLADASGSAVVVAMEGTRPILVEIQALVTPTVFG
NAQRTSAGIDRNRVTLLMAVLEKRASLLLQNQDAYVRAAGGVKLDEPAIDLAVAIAIASSYKDSGTKQTDAFVGEIGLTG
EIRRVPRVLDRIAEAKKLGFKRIFVPKNSIGHDKQVSGIQIIPVATLVEAVKLALD

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=197738 WSWS_RS06650 WP_070230536.1 1371706..1373076(-) (radA) [Weissella soli strain KACC 11848]
ATGGCGAAAACACGCACACAATTTATTTGTTCAAACTGTGGCTATGTGTCACAACGGTATATGGGACGTTGCTCGAATTG
TGGTGCCTGGGGAACGTTGGTTGAAGAAGTCATTCGCCCTGAGGGATCAGATCGCAAGTCACGGGTCAATTTAGCGGGTC
AAGTTGCTAAAGTTGAGCATCTGGGAGATGTCTCAATTGAGGATACCCCACGTGTTGCAACACAGTACGAAGAGTTTAAC
CGCGTGCTAGGCGGTGGTGTCGTCCCAGGTTCTATGGTGCTCATTGGTGGCGATCCAGGCATTGGTAAATCAACATTGCT
TTTGCAAGTGTCAGGACATTTGGCGACGGTTGGTACTGTTTTATATGTGACCGGTGAGGAAAGTGCCTCACAAGTGAAGT
TGCGGGCAGAACGTTTAGGTGTCCATGATGACGCAAACTTTTATCTCTATCCTGAGACAGATATGGGTCAAATTCGTAAA
GCAATTGATGAATTAAATCCTGATTATGTGATTATCGATTCCATTCAAACGATGCAACAACCAGATATACAATCAGCGGT
GGGTTCAGTTGCACAAATTCGGGAAACCACGGCCGAGCTATTGCAAATTGCCAAGAGTAACGGGATTACCATCTTTATCG
TCGGCCACGTGACAAAGGAAGGCACCATTGCAGGTCCCAAGATTTTGGAACACATGGTGGATACCGTATTATATTTTGAA
GGTGATAATCAACGCAGTTTCCGTCTATTGCGGGCGGTTAAAAATCGTTTTGGATCAACCAATGAATTGGGAATCTTTGA
GATGGTGCAAGATGGGTTGACTGAAGTTACGAACCCCTCTGAAATGTTTCTAGAAGAACGTTTGGCAGATGCCTCAGGGT
CTGCGGTTGTGGTCGCAATGGAAGGCACCCGACCAATCTTGGTCGAAATTCAGGCCTTAGTGACGCCAACCGTTTTCGGG
AATGCGCAACGGACATCAGCCGGGATTGACCGTAACCGTGTGACACTGTTAATGGCCGTTTTAGAAAAGCGTGCTAGTCT
ATTGTTACAGAATCAAGATGCCTATGTTCGGGCCGCTGGCGGTGTGAAATTAGATGAACCAGCCATTGATTTAGCGGTGG
CGATTGCGATTGCCTCAAGCTATAAAGATAGCGGTACCAAGCAGACGGATGCCTTTGTCGGTGAAATTGGGTTGACTGGT
GAAATTCGCCGCGTGCCACGCGTACTAGATCGGATTGCTGAAGCCAAAAAATTAGGCTTTAAACGCATTTTTGTACCTAA
AAATAGTATCGGTCATGACAAGCAGGTTAGTGGGATTCAGATCATACCAGTGGCAACATTGGTTGAAGCGGTTAAACTAG
CACTAGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-428)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A288QV07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

64.602

99.123

0.64
  radA Streptococcus pneumoniae Rx1

64.602

99.123

0.64
  radA Streptococcus pneumoniae D39

64.602

99.123

0.64
  radA Streptococcus pneumoniae R6

64.602

99.123

0.64
  radA Streptococcus pneumoniae TIGR4

64.602

99.123

0.64
  radA Streptococcus mitis SK321

64.602

99.123

0.64
  radA Bacillus subtilis subsp. subtilis str. 168

60.394

100

0.605

Multiple sequence alignment