Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BSBS38_RS14000 Genome accession   NZ_CP017314
Coordinates   2604856..2605602 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599856..2610602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS13975 (BSBS38_02815) mreC 2600262..2601134 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  BSBS38_RS13980 (BSBS38_02816) mreB 2601165..2602178 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BSBS38_RS13985 (BSBS38_02817) radC 2602270..2602965 (-) 696 WP_014480455.1 RadC family protein -
  BSBS38_RS13990 (BSBS38_02818) maf 2603002..2603571 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  BSBS38_RS13995 (BSBS38_02819) spoIIB 2603724..2604722 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  BSBS38_RS14000 (BSBS38_02820) comC 2604856..2605602 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  BSBS38_RS14005 (BSBS38_02821) folC 2605742..2607034 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BSBS38_RS14010 (BSBS38_02822) valS 2607094..2609736 (-) 2643 WP_069964239.1 valine--tRNA ligase -
  BSBS38_RS14015 (BSBS38_02823) - 2610184..2610375 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=197640 BSBS38_RS14000 WP_072592551.1 2604856..2605602(-) (comC) [Bacillus subtilis strain BS38]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=197640 BSBS38_RS14000 WP_072592551.1 2604856..2605602(-) (comC) [Bacillus subtilis strain BS38]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment