Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BSBS38_RS05885 Genome accession   NZ_CP017314
Coordinates   1134664..1135242 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BS38     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129664..1140242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS22680 - 1130184..1130699 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  BSBS38_RS22685 - 1130988..1131566 (-) 579 Protein_1088 protoglobin domain-containing protein -
  BSBS38_RS05870 comW 1131621..1133149 (-) 1529 Protein_1089 FAD-dependent oxidoreductase -
  BSBS38_RS05875 (BSBS38_01191) yhxC 1133253..1134110 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  BSBS38_RS05880 (BSBS38_01192) yhzC 1134138..1134371 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BSBS38_RS05885 (BSBS38_01193) comK 1134664..1135242 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BSBS38_RS05890 (BSBS38_01194) yhxD 1135287..1136186 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  BSBS38_RS05895 (BSBS38_01195) yhjA 1136403..1136672 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  BSBS38_RS05900 (BSBS38_01196) yhjB 1136716..1138185 (-) 1470 WP_014479374.1 sodium:solute symporter family protein -
  BSBS38_RS05905 yhjC 1138182..1138381 (-) 200 Protein_1096 DUF3311 domain-containing protein -
  BSBS38_RS05910 (BSBS38_01197) - 1138580..1138951 (-) 372 WP_014476361.1 hypothetical protein -
  BSBS38_RS05915 (BSBS38_01198) yhjE 1139103..1139726 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  BSBS38_RS05920 (BSBS38_01199) lepB 1139728..1140234 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=197601 BSBS38_RS05885 WP_003245329.1 1134664..1135242(+) (comK) [Bacillus subtilis strain BS38]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=197601 BSBS38_RS05885 WP_003245329.1 1134664..1135242(+) (comK) [Bacillus subtilis strain BS38]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment