Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q5W_RS21380 Genome accession   NZ_CP017311
Coordinates   4501094..4502473 (+) Length   459 a.a.
NCBI ID   WP_009519339.1    Uniprot ID   A0A1L1PCL8
Organism   Hydrogenophaga sp. PBC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4496094..4507473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5W_RS21360 (Q5W_21360) - 4496945..4497715 (-) 771 WP_009519335.1 SDR family NAD(P)-dependent oxidoreductase -
  Q5W_RS21365 (Q5W_21365) - 4497715..4498686 (-) 972 WP_009519336.1 tripartite tricarboxylate transporter substrate binding protein -
  Q5W_RS21370 (Q5W_21370) - 4498836..4499885 (+) 1050 WP_009519337.1 nitronate monooxygenase -
  Q5W_RS21375 (Q5W_21375) - 4499896..4501095 (-) 1200 WP_138820135.1 hypothetical protein -
  Q5W_RS21380 (Q5W_21380) radA 4501094..4502473 (+) 1380 WP_009519339.1 DNA repair protein RadA Machinery gene
  Q5W_RS21385 (Q5W_21385) - 4502485..4502895 (+) 411 WP_009519340.1 hypothetical protein -
  Q5W_RS21390 (Q5W_21390) - 4502957..4503895 (+) 939 WP_009519341.1 branched-chain amino acid transaminase -
  Q5W_RS21395 (Q5W_21395) - 4503906..4504112 (+) 207 WP_009519343.1 zinc-finger domain-containing protein -
  Q5W_RS21400 (Q5W_21400) - 4504292..4506061 (+) 1770 WP_138820134.1 hypothetical protein -
  Q5W_RS21405 (Q5W_21405) - 4506164..4506952 (+) 789 WP_009519345.1 1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48473.88 Da        Isoelectric Point: 7.2048

>NTDB_id=197583 Q5W_RS21380 WP_009519339.1 4501094..4502473(+) (radA) [Hydrogenophaga sp. PBC]
MAKDKTIYTCSECGGTSPRWLGKCPHCNAWNTLVEGVAEGGGAPAKNRFAALAKTSEVMPLSRIEAREVERTPTGHEELD
RVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDSLQRAGFPSLYVTGEESGAQVALRARRLGLEGSEVQVLAEIQLEKILA
TLDAEKPAIAVIDSIQTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDTVLYFE
GDTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHAQPVPGSCVMVTLEGTRPLLVELQALVDSGGPS
PRRLSVGLERDRLAMLLAVLHRHAGVACLDQDVFVNAVGGVRISEPAADLGVMLAITSSLRGKPLPKGFLAFGEVGLAGE
VRPAPRGQERLKEAAKLGFSVAVVPRANLPKKNDKAFDGLTVHGVERIEEALELVRRID

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=197583 Q5W_RS21380 WP_009519339.1 4501094..4502473(+) (radA) [Hydrogenophaga sp. PBC]
ATGGCCAAGGACAAGACGATCTACACCTGCAGCGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGCACTG
CAACGCCTGGAACACGCTGGTGGAAGGCGTGGCAGAGGGCGGCGGCGCGCCAGCGAAGAACCGCTTCGCGGCGCTGGCCA
AGACCAGCGAGGTGATGCCGCTCTCGCGCATCGAGGCGCGCGAGGTGGAACGCACGCCCACCGGTCACGAGGAGCTGGAC
CGCGTGCTGGGCGGCGGCATCGTCGAGGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACCCTGCT
GCTGCAGGCGCTGGACAGCCTGCAGCGCGCGGGGTTTCCGTCGCTTTACGTGACGGGTGAAGAAAGCGGCGCCCAGGTGG
CGCTGCGCGCGCGCCGATTGGGCCTGGAGGGCTCCGAGGTGCAGGTGCTGGCCGAGATCCAGCTCGAGAAGATCCTGGCC
ACGCTGGACGCCGAGAAGCCCGCCATCGCGGTGATCGACTCGATCCAGACCGTCTATTCGGAACAGCTCACCAGCGCCCC
GGGTTCGGTGGCGCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGGCCTCGGGCACGGCCATCGTGCTGG
TGGGTCACGTCACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTCTATTTCGAG
GGCGACACGCACAGCAGCTTCCGGCTCATCCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGC
CATGACCGAGAAGGGCCTGAAGGGCGTGAGCAACCCCAGCGCCATCTTCCTGTCGCAGCACGCCCAGCCGGTGCCGGGCA
GTTGCGTGATGGTGACGCTGGAGGGCACGCGCCCCTTGCTGGTGGAACTGCAGGCCCTGGTGGACAGCGGCGGGCCCAGC
CCGCGCCGCCTGAGCGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGGCGTGGC
CTGCCTGGACCAGGACGTCTTCGTCAATGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCGGCCGACCTGGGCGTGATGC
TGGCCATCACCAGCAGCTTGCGCGGCAAGCCGCTGCCCAAGGGCTTTCTGGCCTTCGGCGAGGTGGGCCTGGCCGGCGAG
GTGCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGAAAGAGGCAGCCAAACTGGGCTTTTCCGTGGCGGTGGTGCCCAGGGC
CAACCTGCCGAAGAAGAACGACAAGGCCTTCGACGGCCTGACCGTGCACGGGGTCGAGCGCATCGAAGAGGCGCTGGAGC
TGGTGCGACGCATCGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L1PCL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus pneumoniae Rx1

46.421

100

0.466
  radA Streptococcus pneumoniae D39

46.421

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.421

100

0.466
  radA Streptococcus pneumoniae R6

46.421

100

0.466
  radA Streptococcus mitis SK321

46.32

100

0.466
  radA Streptococcus mitis NCTC 12261

46.204

100

0.464

Multiple sequence alignment