Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   Q5W_RS16100 Genome accession   NZ_CP017311
Coordinates   3395381..3395776 (-) Length   131 a.a.
NCBI ID   WP_009517772.1    Uniprot ID   -
Organism   Hydrogenophaga sp. PBC     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3390381..3400776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5W_RS16085 (Q5W_16085) - 3392137..3394395 (-) 2259 WP_009517769.1 methyl-accepting chemotaxis protein -
  Q5W_RS16090 (Q5W_16090) - 3394455..3394991 (-) 537 WP_009517770.1 chemotaxis protein CheW -
  Q5W_RS16095 (Q5W_16095) - 3395016..3395381 (-) 366 WP_009517771.1 response regulator -
  Q5W_RS16100 (Q5W_16100) pilG 3395381..3395776 (-) 396 WP_009517772.1 response regulator Regulator
  Q5W_RS25330 - 3395868..3396041 (-) 174 WP_081921962.1 rubredoxin -
  Q5W_RS16105 (Q5W_16105) - 3396191..3397141 (+) 951 WP_009517773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q5W_RS16110 (Q5W_16110) hemL 3397146..3398444 (+) 1299 WP_009517774.1 glutamate-1-semialdehyde 2,1-aminomutase -
  Q5W_RS16115 (Q5W_16115) purH 3398471..3400057 (-) 1587 WP_009517775.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  Q5W_RS16120 (Q5W_16120) - 3400083..3400322 (-) 240 WP_009517776.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14351.52 Da        Isoelectric Point: 6.9487

>NTDB_id=197574 Q5W_RS16100 WP_009517772.1 3395381..3395776(-) (pilG) [Hydrogenophaga sp. PBC]
MSASPALKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKINDYQPDLVFCDILMPRLDGYQTCAIIKRNARFAG
IPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGANLNGVS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=197574 Q5W_RS16100 WP_009517772.1 3395381..3395776(-) (pilG) [Hydrogenophaga sp. PBC]
GTGAGTGCATCGCCTGCCCTGAAGGTTCTCGTCGTCGACGATAGCAACACCATCCGGCGCAGCGCCGAGATCTTCCTCAA
GCAGGGCGGCCACGAGGTGCTGCTGGCCGATGATGGCTTCGACGCCCTGGCCAAGATCAACGACTATCAGCCCGATCTGG
TTTTCTGCGACATCCTGATGCCGCGGCTGGATGGCTATCAGACCTGCGCAATCATCAAGCGCAACGCTCGCTTCGCGGGC
ATTCCGGTCGTCATGCTTTCGTCCAAGGACGGCGTCTTCGACAAGGCGCGCGGCCGCATGGTCGGGTCCCAGGATTACCT
CACCAAGCCATTCACCAAAGACCAGTTGCTGCAAGCTGTGCAGCAGTTCGGCGCCAACCTCAACGGAGTTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.478

87.786

0.557

Multiple sequence alignment