Detailed information NTG0197573

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Q5W_RS15585
• Genome accession: NZ_CP017311
• Coordinates: 3292433..3293485 (+)
• Length: 350 a.a.
• NCBI ID: WP_009519894.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. PBC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3287433..3298485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5W_RS15555 (Q5W_15555)	pth	3287642..3288304 (+)	663	WP_009519900.1	aminoacyl-tRNA hydrolase	-
Q5W_RS15560 (Q5W_15560)	-	3288262..3288552 (-)	291	WP_009519899.1	YfhL family 4Fe-4S dicluster ferredoxin	-
Q5W_RS15565 (Q5W_15565)	coaD	3288563..3289075 (-)	513	WP_009519898.1	pantetheine-phosphate adenylyltransferase	-
Q5W_RS25795 (Q5W_15570)	rsmD	3289075..3289668 (-)	594	WP_009519897.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
Q5W_RS15575 (Q5W_15575)	-	3289693..3291030 (-)	1338	WP_009519896.1	pitrilysin family protein	-
Q5W_RS15580 (Q5W_15580)	-	3291027..3292403 (-)	1377	WP_009519895.1	pitrilysin family protein	-
Q5W_RS15585 (Q5W_15585)	pilA	3292433..3293485 (+)	1053	WP_009519894.1	signal recognition particle-docking protein FtsY	Machinery gene
Q5W_RS15590 (Q5W_15590)	-	3293478..3293690 (-)	213	WP_009519893.1	zf-HC2 domain-containing protein	-
Q5W_RS15595 (Q5W_15595)	-	3293687..3294259 (-)	573	WP_009519892.1	sigma-70 family RNA polymerase sigma factor	-
Q5W_RS15600 (Q5W_15600)	-	3294398..3294679 (+)	282	WP_009519891.1	DUF2282 domain-containing protein	-
Q5W_RS15605 (Q5W_15605)	-	3294700..3295602 (+)	903	WP_009519890.1	DUF692 domain-containing protein	-
Q5W_RS15610 (Q5W_15610)	-	3295599..3296396 (+)	798	WP_009519889.1	DUF2063 domain-containing protein	-
Q5W_RS15615 (Q5W_15615)	-	3296378..3296836 (+)	459	WP_009519888.1	DoxX family protein	-
Q5W_RS15620 (Q5W_15620)	-	3296870..3298039 (+)	1170	WP_009519887.1	FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37019.50 Da
• Isoelectric Point: 6.5077

>NTDB_id=197573 Q5W_RS15585 WP_009519894.1 3292433..3293485(+) (pilA) [Hydrogenophaga sp. PBC]
MFSFFRKKNPAPAPEAPVVTPDAPPAVEPVAAPAPAPEHPPTSAARPAPAAPRESWLNRLKSGLRRTGSGIATVFTGTRI
DEDLYEELEAALLMADSGVSATQHLLTDLRRRVKEAKATEPAAVKALLADAIADLLKPLQKPLVIGEHKPTVIMVAGVNG
AGKTTSIGKLTRHLADDGASVLLAAADTFRAAAREQLAVWADRNTVDIVTQEGGDPAAVCFDAVSAGKARGKDVVLVDTA
GRLPTQLHLMEELRKIRRVVNKADASAPHEVLLVIDGNTGQNALTQVKAFDEALQLTGLIITKLDGTAKGGVLCAIARER
PVPVYFIGVGEKLEDLETFDAREYAQALLS

Nucleotide

• Length: 1053 bp

>NTDB_id=197573 Q5W_RS15585 WP_009519894.1 3292433..3293485(+) (pilA) [Hydrogenophaga sp. PBC]
ATGTTCTCGTTCTTTCGCAAAAAAAATCCCGCGCCCGCCCCTGAGGCACCGGTGGTCACGCCCGATGCCCCCCCGGCCGT
CGAGCCTGTTGCGGCGCCGGCACCGGCACCGGAGCACCCACCGACGAGCGCTGCACGACCCGCGCCAGCCGCTCCCCGCG
AGAGCTGGCTGAACCGCCTGAAGAGCGGACTGCGCCGCACCGGCAGCGGCATTGCCACGGTGTTCACCGGCACGCGCATC
GACGAGGACCTGTACGAAGAGCTCGAGGCCGCCCTGCTCATGGCCGACAGCGGCGTATCGGCCACGCAGCACCTGCTGAC
CGACCTGCGCCGCCGCGTGAAGGAGGCCAAGGCCACCGAGCCGGCCGCCGTGAAGGCCTTGCTGGCCGACGCCATCGCCG
ATCTGCTGAAACCCTTGCAGAAGCCGCTCGTCATCGGCGAGCACAAGCCCACCGTCATCATGGTCGCCGGCGTCAACGGC
GCGGGCAAGACCACGTCCATCGGCAAGCTCACGCGCCACCTGGCCGACGATGGCGCCAGCGTGCTGCTGGCCGCCGCCGA
CACCTTCCGCGCGGCCGCGCGCGAACAGTTGGCCGTATGGGCCGACCGGAACACGGTGGACATCGTGACGCAGGAAGGCG
GCGACCCGGCCGCCGTGTGCTTCGACGCCGTGAGCGCCGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTGGACACCGCC
GGCCGCCTGCCCACGCAATTGCACCTGATGGAAGAGCTGCGCAAGATCCGCCGCGTGGTGAACAAGGCGGACGCCTCCGC
GCCGCACGAGGTGCTGCTGGTCATCGACGGCAACACTGGCCAGAACGCGCTCACGCAGGTCAAGGCCTTCGACGAGGCCC
TGCAGCTCACGGGTCTCATCATCACCAAGCTTGACGGCACGGCCAAAGGGGGCGTGCTCTGCGCCATCGCGCGCGAGCGG
CCCGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGCTCGAAGACCTCGAGACATTCGACGCGCGCGAGTACGCGCAGGC
CCTGCTCAGCTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (69-131)

• SRP54-type protein, GTPase domain (SRP54) (150-349)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	59.197	85.429	0.506