Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   WH25_RS09470 Genome accession   NZ_CP017295
Coordinates   1975319..1977085 (-) Length   588 a.a.
NCBI ID   WP_046164750.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1970319..1982085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09455 (WH25_09455) - 1970412..1972025 (-) 1614 WP_046164608.1 CTP synthase -
  WH25_RS09460 (WH25_09460) manA 1972467..1973411 (-) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  WH25_RS09465 (WH25_09465) rcrQ 1973572..1975329 (-) 1758 WP_046164609.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09470 (WH25_09470) rcrP 1975319..1977085 (-) 1767 WP_046164750.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09475 (WH25_09475) - 1977078..1977536 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  WH25_RS09480 (WH25_09480) - 1977807..1978376 (-) 570 WP_046164610.1 hypothetical protein -
  WH25_RS09485 (WH25_09485) - 1978385..1978795 (-) 411 WP_046164611.1 peptide deformylase -
  WH25_RS09490 (WH25_09490) scrK 1978844..1979743 (-) 900 WP_046164612.1 fructokinase ScrK -
  WH25_RS09495 (WH25_09495) - 1979984..1980508 (-) 525 WP_046164613.1 hypothetical protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64843.19 Da        Isoelectric Point: 5.9007

>NTDB_id=197441 WH25_RS09470 WP_046164750.1 1975319..1977085(-) (rcrP) [Streptococcus gordonii strain IE35]
MFKLFKRLTSKEIGLILMTVVFICLTVYLELEVPTYMSEITTLLQTPGTTTGDLWVPGLKMLGLSFASLFSLVIAGFVSS
RMASSYTTRLREDIFNRVLDYSNSEIKKFSIPSLLTRTTNDITQIQVFIAMGLQVVIRGSIMAIWAMTKVVGKSDAWLIA
VLVAVAAIILMTIVLVTLAFPKQSIVQTLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFGAANDEVTSLNIFINRFMSL
FNPIMSGISSGLTLAIYWIGAYLIHSAASADKLGLFSDMVVFMSYGMQVVIGFLLMGALFIVLPRTLVSAGRINKVLAVD
SSIKEKDQAQTEGQSKGQVAFEDVSFRYAKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLVNLITRFYDVTEGRILVD
GIDVRDYELKALRNKVGYIPQKAVLFSGTIASNLDFGESMETPLDEEKMWEALELAQAKSFVEEKEAGLESKVAQGGTNY
SGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAEQTQHMTKLIVAQRISTIMDADQILVLDNGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=197441 WH25_RS09470 WP_046164750.1 1975319..1977085(-) (rcrP) [Streptococcus gordonii strain IE35]
ATGTTTAAATTATTTAAACGCTTGACGTCAAAAGAAATCGGACTGATTTTGATGACAGTTGTTTTTATCTGTCTGACCGT
TTATTTAGAGTTAGAAGTTCCGACTTATATGTCAGAAATTACAACCTTACTACAGACACCGGGGACAACGACAGGAGATC
TATGGGTACCAGGTTTGAAAATGCTAGGCCTATCCTTTGCCAGCTTATTCTCCTTGGTAATAGCTGGTTTTGTGTCCTCT
CGGATGGCTTCTAGCTATACTACCCGCTTGCGTGAGGATATTTTTAATCGTGTTTTGGATTATTCTAATTCAGAGATTAA
AAAATTCTCTATCCCTAGCCTTCTGACCAGAACAACCAACGATATTACCCAAATTCAGGTGTTTATCGCTATGGGACTAC
AAGTTGTTATTCGAGGAAGCATCATGGCTATTTGGGCTATGACGAAGGTTGTTGGCAAATCAGATGCTTGGTTGATCGCT
GTTTTAGTCGCGGTTGCGGCCATTATATTGATGACGATTGTCTTAGTGACTTTGGCTTTTCCAAAGCAGTCTATTGTACA
AACCTTGACTGATAAGTTAAACAGTGTGACACGTGAAAGTTTGACAGGGATTCGAGTCGTTCGGGCCTATAACGCAGAAG
ATTACCAGGATGCAAAATTTGGTGCAGCAAACGACGAGGTAACTAGCCTTAATATTTTTATTAACCGCTTCATGTCTTTG
TTCAATCCGATTATGAGCGGAATTTCAAGTGGTTTAACCCTGGCTATTTACTGGATTGGAGCTTATTTGATTCATAGCGC
AGCATCTGCTGATAAGCTTGGTCTATTCAGTGATATGGTTGTTTTCATGTCTTATGGTATGCAGGTTGTAATTGGCTTCT
TGCTGATGGGGGCTTTGTTTATTGTTTTACCACGTACCCTTGTTTCAGCTGGCCGGATTAACAAAGTGCTAGCAGTCGAT
AGCAGTATCAAAGAAAAAGATCAAGCACAGACTGAGGGCCAAAGCAAAGGACAAGTAGCTTTTGAAGATGTTTCTTTCCG
TTATGCAAAAAATTCTGAAGCAGTAATTGAGCATGTTAGTTTCACTGCTAAAGCTGGTGAAACAGTGGCCTTTATCGGAT
CTACTGGCTCAGGTAAATCAACCCTTGTCAATTTGATAACTCGTTTCTATGATGTGACAGAAGGTAGGATTCTAGTCGAT
GGTATAGACGTCCGTGACTACGAGCTTAAAGCTCTACGTAATAAGGTAGGGTATATTCCGCAGAAAGCTGTACTTTTTTC
AGGAACAATTGCTTCAAATTTGGACTTTGGAGAAAGCATGGAAACTCCACTAGATGAAGAGAAAATGTGGGAAGCCCTTG
AACTAGCACAAGCCAAATCATTTGTAGAAGAAAAAGAGGCAGGACTTGAATCTAAAGTAGCCCAAGGAGGCACCAACTAC
TCTGGCGGTCAACGCCAACGTCTAGCTATTGCGCGTGCATTGGCCCGTAAGCCAGAAATTTTGATATTTGATGATTCTTT
CTCTGCTTTGGACTATAAGACAGATCGTATTTTACGAAAAGAATTGGCAGAACAGACCCAACATATGACAAAACTGATTG
TCGCCCAACGAATTTCCACTATTATGGATGCCGATCAAATCCTAGTTCTAGACAATGGTAAAGTCGTTGGACAAGGTACC
CATAAAGAGTTGTTGGCTACGAATGAAGTGTACCAAGAAATTGCTTATTCTCAATTATCAAAGGAGGAACTAGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(54-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

69

100

0.704

Multiple sequence alignment