Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WH25_RS09465 Genome accession   NZ_CP017295
Coordinates   1973572..1975329 (-) Length   585 a.a.
NCBI ID   WP_046164609.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968572..1980329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09440 (WH25_09440) - 1968643..1969524 (-) 882 WP_046164606.1 class II fructose-bisphosphate aldolase -
  WH25_RS09450 (WH25_09450) - 1969931..1970341 (-) 411 WP_046164607.1 GyrI-like domain-containing protein -
  WH25_RS09455 (WH25_09455) - 1970412..1972025 (-) 1614 WP_046164608.1 CTP synthase -
  WH25_RS09460 (WH25_09460) manA 1972467..1973411 (-) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  WH25_RS09465 (WH25_09465) rcrQ 1973572..1975329 (-) 1758 WP_046164609.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09470 (WH25_09470) rcrP 1975319..1977085 (-) 1767 WP_046164750.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09475 (WH25_09475) - 1977078..1977536 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  WH25_RS09480 (WH25_09480) - 1977807..1978376 (-) 570 WP_046164610.1 hypothetical protein -
  WH25_RS09485 (WH25_09485) - 1978385..1978795 (-) 411 WP_046164611.1 peptide deformylase -
  WH25_RS09490 (WH25_09490) scrK 1978844..1979743 (-) 900 WP_046164612.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64902.73 Da        Isoelectric Point: 5.0237

>NTDB_id=197440 WH25_RS09465 WP_046164609.1 1973572..1975329(-) (rcrQ) [Streptococcus gordonii strain IE35]
MENKKTSLFTQMKPYIKGFQLPFVIAVAGAIISSIITVFGPYKLREITNLITEGLVGEMDLGAISNIGFFLAFLYVVGSL
INYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMM
FYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTS
MWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFE
FLAEEDMEDDSHKLQQLTSVKGRVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIDRGR
ITIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEQGGFYADLYNSQFVEEDQE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=197440 WH25_RS09465 WP_046164609.1 1973572..1975329(-) (rcrQ) [Streptococcus gordonii strain IE35]
ATGGAAAATAAAAAGACATCTTTATTTACCCAGATGAAGCCCTATATTAAAGGCTTCCAACTTCCTTTTGTCATTGCAGT
AGCCGGTGCTATCATCTCTAGTATTATTACAGTCTTTGGTCCCTATAAGTTGCGTGAAATCACAAACTTAATTACAGAAG
GTCTAGTAGGTGAGATGGACTTGGGAGCTATCTCAAATATAGGTTTCTTCCTAGCTTTCCTTTATGTTGTAGGTTCTCTT
ATCAATTATGCGCAGGGTTATGCTATTTCGGATATGATTCAGCACTTTTCAAAACGTTTGAGAACTGCGATTGCAGAGAA
AATCAACCGCCTACCATTAAGTTACTTTGATAGTCATTCTCAAGGCGATACCCTATCACGTGTGACAAATGATGTAGATA
CAGTCGGACAATCGTTGACACAGAGCTTGGGGACTCTGATTTCTTCGGTCTTACTTTTAATTGCTGTACTCTTTATGATG
TTTTATACTAATGTTGTACTTTCATTTGTGACGATTGGTTCGGTCTTATTGGGTTTCGTTTTCTCAGCAGTTCTGATGGC
GAAATCTCAGAGATATTTCCAAGAACAGCAAAGTAACCTAGCAGCTATCAATGGTTATGTGGAAGAAATGTACTCCGGGC
ACAATGTTATCACTAGCTACAATGGTGCAGAAAAGACGCGCTTGGCCTTCAATGCCCTCAATCAAAATCTGTATACTAGT
ATGTGGAAGTCACAATTTATTTCAGGAATTATGTTTCCTCTGATGAACTTTGTTGGTAATTTTGGATATGTGATGGTCGT
GATTGTAGGTGCCACAATGGCTATTAATGGCTCCATTAGCATGGGTACGATTGTAGCTTTCATGGTCTACGTACGAATTT
TTTCACAACCTCTTTCCCAAATTGCTCAGGGAATCACAACACTCCAATCTGCTAGTGCAGCTATGGGACGTGTCTTTGAG
TTTCTAGCAGAAGAAGATATGGAAGATGATTCTCACAAACTTCAACAATTAACAAGTGTAAAAGGACGTGTCCAGTTTAA
AGATGTCTTCTTTGGTTACAATCCTGATAAGACTATTATTCACGATTTCTCAGCAGAAGCAAAGGCTGGACAAAAAATTG
CAATTGTTGGCCCTACTGGTGCGGGTAAAACAACCATCGTCAATCTTCTTATGAAGTTCTATGATATTGACCGTGGTCGC
ATCACCATTGATGGCGTTGATACCAAAGAAATGAAACGCTCTGAAGTTCACGATGCTTTCTCTATGGTGTTACAGGACAC
ATGGCTTTTTGAAGGGACTATTAAAGAAAACTTGATCTATAATCAGAAAGATATCACGGACCAAGCAGTTGTTGAAGCTG
CAAAAGCGGTTGGTGTCCACCACTTTATCATGACCTTACCAGACGGTTATGATACGGTTTTGGATGACACAGTCAGTCTT
TCTGTTGGTCAAAAGCAGCTCTTGACTATTGCAAGGGCTCTGCTCAAAGATGCGCCACTCCTTATCTTAGATGAGGCAAC
TTCCTCAGTCGATACACGGACAGAGGAATTGATTCAAAAAGCGATGGACAAGCTGATGGAAGGCAGGACTTCCTTTGTCA
TTGCTCACCGACTATCCACCATTCGCAATGCTGATTTGATCCTAGTCATGCGTGATGGGAATATTATCGAACAAGGAAAC
CATGACCAGCTCATGGAGCAGGGAGGTTTCTACGCTGATCTTTACAACAGTCAGTTCGTTGAAGAAGATCAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.962

99.487

0.706

Multiple sequence alignment