Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   WH25_RS08965 Genome accession   NZ_CP017295
Coordinates   1876323..1877033 (+) Length   236 a.a.
NCBI ID   WP_046165239.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1871323..1882033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS08955 (WH25_08955) treC 1872373..1873998 (-) 1626 WP_046165241.1 alpha,alpha-phosphotrehalase -
  WH25_RS08960 (WH25_08960) treP 1874134..1876143 (-) 2010 WP_046165240.1 PTS system trehalose-specific EIIBC component -
  WH25_RS08965 (WH25_08965) treR 1876323..1877033 (+) 711 WP_046165239.1 trehalose operon repressor Regulator
  WH25_RS08970 (WH25_08970) - 1877324..1877857 (-) 534 WP_231108789.1 hypothetical protein -
  WH25_RS08975 (WH25_08975) - 1878089..1879429 (-) 1341 WP_046165237.1 hemolysin family protein -
  WH25_RS08980 (WH25_08980) - 1879521..1881167 (-) 1647 WP_046165236.1 phosphoenolpyruvate carboxykinase (ATP) -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27697.82 Da        Isoelectric Point: 9.3050

>NTDB_id=197430 WH25_RS08965 WP_046165239.1 1876323..1877033(+) (treR) [Streptococcus gordonii strain IE35]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIVKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYRLVWRIVRQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENDLGLSIDYAKKEITIDHATSRDKILLDIERENHVVSVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHN

Nucleotide


Download         Length: 711 bp        

>NTDB_id=197430 WH25_RS08965 WP_046165239.1 1876323..1877033(+) (treR) [Streptococcus gordonii strain IE35]
ATGAAGAAATACCAACAATTATTCAAACTAATCGAGCAAGATATCCTGAGCGAGAAATACCCCGTTGGCGAATTTTTACC
TAGTGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAGGCTCTAGAGCAACTTCAAAAAGAAG
GATTAATTCAAAAATTTAAGGGACAAGGATCCAAAATCGTCAAACAGGAACACATCAATTTCCCAATCTCCAATCTGACT
AGCTACCAAGAACTCGTCCTACAAAATAAACTAGACTCTAAAACCAATGTCATCAGCCTAGAAAAGATAACCGTAGATAA
AAAACTTGCTAAGCTAACTGGTTTTCCGGAATATCGCTTGGTTTGGCGAATTGTTCGACAAAGAGTTGTTGATCAGGTTG
CTTCTGTCCTTGATATTGATTATTTAGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCTATCTAT
CATTTCATTGAAAATGATCTTGGACTTAGCATCGACTATGCTAAAAAGGAAATCACCATTGATCATGCGACCAGTCGAGA
TAAAATTTTGCTCGATATTGAGAGAGAAAACCATGTCGTTTCCGTCAAATCTCAGGTTTATTTAGCGAACGGGCAGCAAT
TTCAGTTCACAGACAGCAGACACAAACTCGATAAATTTCGCTTTGTTGATTTTGCCAAAAGGCACAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-65)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.576

0.644

Multiple sequence alignment