Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WH25_RS08630 Genome accession   NZ_CP017295
Coordinates   1796348..1798150 (-) Length   600 a.a.
NCBI ID   WP_046165281.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791348..1803150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS08615 (WH25_08615) - 1793814..1794299 (-) 486 WP_045635097.1 LURP-one-related/scramblase family protein -
  WH25_RS08620 (WH25_08620) prsA 1794528..1795457 (-) 930 WP_008809506.1 peptidylprolyl isomerase PrsA -
  WH25_RS08625 (WH25_08625) - 1795660..1796346 (-) 687 WP_046165282.1 O-methyltransferase -
  WH25_RS08630 (WH25_08630) pepF 1796348..1798150 (-) 1803 WP_046165281.1 oligoendopeptidase F Regulator
  WH25_RS08635 (WH25_08635) - 1798339..1798725 (-) 387 WP_046165280.1 DUF1310 family protein -
  WH25_RS11015 - 1798862..1799050 (-) 189 WP_335743726.1 DUF1310 family protein -
  WH25_RS11020 - 1799099..1799257 (-) 159 WP_231108787.1 hypothetical protein -
  WH25_RS08645 (WH25_08645) coiA 1799421..1800365 (-) 945 WP_046165279.1 competence protein CoiA Machinery gene
  WH25_RS08650 (WH25_08650) - 1800451..1801623 (-) 1173 WP_046165278.1 MFS transporter -
  WH25_RS08655 (WH25_08655) - 1801721..1803103 (-) 1383 WP_052721546.1 DUF1958 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69502.44 Da        Isoelectric Point: 4.4792

>NTDB_id=197425 WH25_RS08630 WP_046165281.1 1796348..1798150(-) (pepF) [Streptococcus gordonii strain IE35]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDRLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIDLRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFTVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=197425 WH25_RS08630 WP_046165281.1 1796348..1798150(-) (pepF) [Streptococcus gordonii strain IE35]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGCAATCTAGCAGGGCATCTGCTGGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGCCGTATTGAGAAACTTTATTCCTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTAGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTACAGTGAGTTTGGTCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGACCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACTT
ATCAACATTATTTTGATAGGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTTCCGGTGGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGAAACTATATTTCTTTAGTAGAGTCTAAAAATCGGGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGCGTTTATGAACAGTATCAGCATACTTATGCCAAGACCTTGCAAACAAATGTTAAGGTTCAA
AATTACAATGCGAAAGTCCGCAAGTTCTCATCTGCTCGTGAGGCGGCCTTATCGGCCAACTTTATTCCAGAGAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCGCTTTTACAGCGTTATATTGACTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATTTGTACACGCCGTTGTCAGAAACAGATTATAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGAGCATACTCAGGTGGCTCTTATGATACCAATGCCTTTATGTTGCTCAACT
GGCAGGATACACTAGATAATCTTTTTACCTTGGTGCACGAGACAGGTCACAGTATGCACTCCAGCTATACTCGCGAAACC
CAGCCTTATGTCTATGGAGACTACTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCTTGACAGAAAA
GCTCTTGGAAGAAGTAGAAGACGACGCTACTCGCTTTGCGATTCTCAATCACTTCTTGGATGGCTTTAGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCGGAGTTTGAGCATGCGATCCATAAGGCTGACCAAGAAGGACAAGTATTGACTAGCGAGTTT
CTCAATGAGCTCTACGCTGACTTGAATGAGAAATACTATGGACTGAAAAAAGAAGACAATCCGCAGATTCAGTACGAATG
GGCTCGGATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCTACAGGATTTGCAGCCGCTTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCAGGAAGACAAGGACAAGTATCTGGACTATCTCAAAGCTGGGAATTCTGACTATCCGCTC
AATGTCATTAAGAAGGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCAGCCTTTACAGTATTTGAGCGTCGCTT
GGATGAATTTGAAGCTTTGGTAGAAAAGTTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683

Multiple sequence alignment