Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WH25_RS01765 Genome accession   NZ_CP017295
Coordinates   353904..355271 (+) Length   455 a.a.
NCBI ID   WP_080998572.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 348904..360271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS01740 (WH25_01740) - 349409..351178 (+) 1770 WP_046164877.1 ABC transporter ATP-binding protein -
  WH25_RS01745 (WH25_01745) - 351357..352046 (+) 690 WP_008808191.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  WH25_RS01750 (WH25_01750) - 352311..352760 (+) 450 WP_046164878.1 8-oxo-dGTP diphosphatase -
  WH25_RS01755 (WH25_01755) - 352846..353289 (+) 444 WP_046164879.1 dUTP diphosphatase -
  WH25_RS01760 (WH25_01760) - 353299..353757 (+) 459 WP_046164880.1 isochorismatase family protein -
  WH25_RS10935 - 353818..353898 (+) 81 Protein_335 SAM-dependent methyltransferase -
  WH25_RS01765 (WH25_01765) radA 353904..355271 (+) 1368 WP_080998572.1 DNA repair protein RadA Machinery gene
  WH25_RS01770 (WH25_01770) - 355384..356094 (+) 711 WP_046164881.1 TIGR00266 family protein -
  WH25_RS01775 (WH25_01775) - 356231..356725 (+) 495 WP_008808198.1 beta-class carbonic anhydrase -
  WH25_RS01780 (WH25_01780) gltX 356875..358332 (+) 1458 WP_046164882.1 glutamate--tRNA ligase -
  WH25_RS01785 (WH25_01785) - 358508..359707 (+) 1200 WP_046164883.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49774.14 Da        Isoelectric Point: 5.7873

>NTDB_id=197400 WH25_RS01765 WP_080998572.1 353904..355271(+) (radA) [Streptococcus gordonii strain IE35]
MTIVKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=197400 WH25_RS01765 WP_080998572.1 353904..355271(+) (radA) [Streptococcus gordonii strain IE35]
ATCACCATCGTTAAGAAAAAAACGACCTTTGTTTGTCAAAATTGTGAATATCATTCGCCCAAGTACCTAGGCCGCTGTCC
TAATTGTGGAGCTTGGTCTTCTTTTGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCCCGTGTTTCCCTGACAGGTG
AAAAGACTCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTTAATCGGACCAAGACGGAAATGGACGAGTTCAAC
CGTGTGCTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCT
TCTGCAGGTATCCACCCAGCTTTCTCATCAGGGCACCGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGC
TGCGGGCGGAGCGTCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAGAAGATTAAGCCAGATTTTCTGATTATTGACTCCATTCAGACAGTTATGTCGCCAGAAATTTCCAGTGTCCAAGG
CTCTGTTTCTCAGGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGCCCTCGAACTTTGGAGCACATGGTGGACACCGTGCTTTATTTTGAGGGC
GAACGTCAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGTTCGACCAATGAGATTGGTATTTTTGAGAT
GCAGTCTGGTGGGTTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTCTGGAAGAACGTCTGGACGGCGCGACAGGCTCTT
CCATCGTCGTGACCATGGAAGGGACGCGGCCGATTTTGGCAGAAGTCCAGGCTTTGGTGACACCGACCATGTTTGGCAAT
GCCAAGCGAACCACGACTGGACTGGACTTTAACCGAGCCAGCCTCATCATGGCGGTTCTGGAAAAACGGGCGGGGCTCCT
TCTGCAAAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCGGTAGCGG
TAGCCATTGCTTCCAGCTACAAGGATCTGCCTACCAATCCTCAAGAGTGCTTTATTGGTGAAATTGGCCTGACTGGTGAA
ATCCGTCGAGTCAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGCTTCACTAAAGTCTACGCTCCTAAAAA
CTCTCTGAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATTGGTGTGACAACGATTGGGGAAGTCTTAAAGAAAGTAT
TTTCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.17

99.56

0.908
  radA Streptococcus pneumoniae D39

90.949

99.56

0.905
  radA Streptococcus pneumoniae R6

90.949

99.56

0.905
  radA Streptococcus pneumoniae Rx1

90.949

99.56

0.905
  radA Streptococcus mitis SK321

90.949

99.56

0.905
  radA Streptococcus pneumoniae TIGR4

90.949

99.56

0.905
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment