Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BBD65_RS11290 Genome accession   NZ_CP017289
Coordinates   1883728..1884324 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain GJ3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878728..1889324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD65_RS11265 (BBD65_08640) - 1878957..1880714 (-) 1758 WP_077139097.1 AAA family ATPase -
  BBD65_RS11270 (BBD65_08645) matP 1880900..1881352 (+) 453 WP_012542298.1 macrodomain Ter protein MatP -
  BBD65_RS11275 (BBD65_08650) ompA 1881463..1882515 (-) 1053 WP_008805892.1 porin OmpA -
  BBD65_RS11280 (BBD65_08655) sulA 1882868..1883377 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  BBD65_RS11290 (BBD65_08660) sxy/tfoX 1883728..1884324 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  BBD65_RS11295 (BBD65_08665) yccS 1884338..1886473 (-) 2136 WP_008805895.1 YccS family putative transporter -
  BBD65_RS11300 (BBD65_08670) - 1886491..1886937 (-) 447 WP_008805896.1 YccF domain-containing protein -
  BBD65_RS11305 (BBD65_08675) helD 1887062..1889116 (+) 2055 WP_023297334.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=197332 BBD65_RS11290 WP_012542296.1 1883728..1884324(+) (sxy/tfoX) [Klebsiella variicola strain GJ3]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=197332 BBD65_RS11290 WP_012542296.1 1883728..1884324(+) (sxy/tfoX) [Klebsiella variicola strain GJ3]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTATCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment