Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A4W87_RS08390 Genome accession   NZ_CP017273
Coordinates   1634551..1636350 (+) Length   599 a.a.
NCBI ID   WP_180752578.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629551..1641350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS08370 (A4W87_08325) - 1630750..1631481 (-) 732 WP_056947344.1 GntR family transcriptional regulator -
  A4W87_RS08380 (A4W87_08335) - 1631785..1633020 (-) 1236 WP_056947341.1 nucleoside transporter C-terminal domain-containing protein -
  A4W87_RS08385 (A4W87_08340) - 1633165..1634352 (-) 1188 WP_076631975.1 LCP family protein -
  A4W87_RS08390 (A4W87_08345) pepF 1634551..1636350 (+) 1800 WP_180752578.1 oligoendopeptidase F Regulator
  A4W87_RS08395 (A4W87_08350) - 1636387..1637163 (-) 777 WP_011373994.1 metal ABC transporter permease -
  A4W87_RS08400 (A4W87_08355) - 1637198..1637878 (-) 681 WP_056947332.1 ATP-binding cassette domain-containing protein -
  A4W87_RS08405 (A4W87_08360) - 1637875..1638762 (-) 888 WP_056947329.1 zinc ABC transporter substrate-binding protein -
  A4W87_RS08410 (A4W87_08365) - 1638912..1639535 (-) 624 WP_143457233.1 hypothetical protein -
  A4W87_RS08415 (A4W87_08370) - 1639556..1641096 (-) 1541 Protein_1601 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67531.24 Da        Isoelectric Point: 4.4710

>NTDB_id=197238 A4W87_RS08390 WP_180752578.1 1634551..1636350(+) (pepF) [Latilactobacillus sakei strain TMW 1.1396]
MHKLPTRSEVPENLTWDLSTIFKSDSDFEVAVATLKQALPALEQYNQPFKTADQLVTTIEQVLTLFRQLETVYVYASMKN
DQDTANTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNEPALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QTTAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYPLVHETGHSGHSYLTR
HNQPYVYGDYPIFVAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNAHYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQISTNQPGALDNYLAYLKNGSASY
PIETMQKAGVDMTNADYLEHAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=197238 A4W87_RS08390 WP_180752578.1 1634551..1636350(+) (pepF) [Latilactobacillus sakei strain TMW 1.1396]
ATTCACAAATTACCCACACGCTCTGAAGTCCCTGAAAACTTAACCTGGGACCTCAGTACCATTTTCAAAAGCGACTCAGA
TTTCGAAGTAGCTGTCGCAACGCTCAAACAGGCACTACCAGCACTTGAACAATACAACCAACCGTTTAAAACGGCTGATC
AACTCGTAACAACGATTGAACAAGTGCTAACGCTCTTTAGACAGTTAGAAACGGTCTACGTTTACGCTAGCATGAAAAAC
GATCAAGATACAGCTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGACCAATTAACTGACTGGCAGACCAATGAGCCAGCACTTAAAA
GTTATCAACATTTTATCCAGACTATCACTGATAGCCGCGAACATGTCTTATCAGGTCAAGAAGAAGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCTGCTAGCCAAACCTTCAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTTGAAGCACTCTACAGCACTTATGATCAGTTCAAAAATACATTTGCGACAACCCTTGCGACTGAGATCAAAGGG
CACAACTACCTCGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCACCTAAAGCCATTCCTGAATCAGT
CTACACGACCTTAGTCGACCAAGTGAACCAACATTTGCCATTATTACATCGTTATGTTAAATTACGTCAAAAGCAATTAG
CATTACCGCAATTGCATATGTACGACTTATACACACCACTTTTAGGCAAACCCGCTTTGAGCTACACTTATCCACAAGCA
CAAACAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATACACCCCAATTGTGGACCAAATCTTCGATCAACGGCA
AATTGATGTCGTTGAAAACAAAGGCAAGCGCAGCGGCGCTTACTCTGGTGGTGCTTACGATACCAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACCCACTGGTCCACGAAACTGGCCACAGTGGCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGCGATTATCCAATCTTCGTCGCTGAAATTGCGTCAACAACGAATGAAAACCTGCTTAC
TGAATATCTTTTGAAGACCCAAAAAGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CTGTCTTCCGTCAAACACAATTTGCCGAATTCGAACACTATATTCACGATGCAGCAGCCAATGGAACCCCTCTAACGGCT
GACTTCATGTCAACTTACTACGCTGACTTAAACGCTCACTACTATGGCGATGCCGTCGCCAAAGATCCTCAAATTGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGTTTTGCCGCTGCGACGACGC
TCGCTGATCAAATCAGTACGAACCAACCGGGTGCACTCGACAATTATCTCGCCTACCTCAAAAATGGGAGTGCCAGTTAC
CCAATTGAAACGATGCAAAAAGCCGGTGTGGATATGACTAACGCCGATTATCTCGAACACGCTTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.653

98.664

0.539

Multiple sequence alignment