Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | A4W86_RS09285 | Genome accession | NZ_CP017272 |
| Coordinates | 1837670..1838359 (+) | Length | 229 a.a. |
| NCBI ID | WP_251950797.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.1239 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1832670..1843359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W86_RS09265 (A4W86_09205) | - | 1833112..1833663 (+) | 552 | WP_061827366.1 | isochorismatase family cysteine hydrolase | - |
| A4W86_RS09270 (A4W86_09210) | fusA | 1834233..1836320 (-) | 2088 | WP_016265721.1 | elongation factor G | - |
| A4W86_RS09275 (A4W86_09215) | rpsG | 1836416..1836886 (-) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| A4W86_RS09280 (A4W86_09220) | rpsL | 1836976..1837389 (-) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| A4W86_RS09285 (A4W86_09225) | comC | 1837670..1838359 (+) | 690 | WP_251950797.1 | A24 family peptidase | Machinery gene |
| A4W86_RS09290 (A4W86_09230) | - | 1838363..1838935 (-) | 573 | WP_061827365.1 | isochorismatase family protein | - |
| A4W86_RS09295 (A4W86_09235) | rpoC | 1839109..1842753 (-) | 3645 | WP_035147345.1 | DNA-directed RNA polymerase subunit beta' | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26204.53 Da Isoelectric Point: 7.2085
>NTDB_id=197205 A4W86_RS09285 WP_251950797.1 1837670..1838359(+) (comC) [Latilactobacillus sakei strain TMW 1.1239]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWLGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWLGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=197205 A4W86_RS09285 WP_251950797.1 1837670..1838359(+) (comC) [Latilactobacillus sakei strain TMW 1.1239]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGCTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGCTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
96.943 |
100 |
0.969 |