Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BHU02_RS05425 Genome accession   NZ_CP017271
Coordinates   1063340..1064206 (-) Length   288 a.a.
NCBI ID   WP_251920186.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1058340..1069206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS05410 (BHU02_05310) topA 1059576..1061660 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  BHU02_RS05415 (BHU02_05315) - 1061910..1062344 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  BHU02_RS05420 (BHU02_05320) - 1062373..1063239 (-) 867 WP_056936410.1 NAD(P)H-binding protein -
  BHU02_RS05425 (BHU02_05325) dprA 1063340..1064206 (-) 867 WP_251920186.1 DNA-processing protein DprA Machinery gene
  BHU02_RS05430 (BHU02_05330) - 1064261..1065022 (-) 762 WP_025015772.1 ribonuclease HII -
  BHU02_RS05435 (BHU02_05335) ylqF 1065024..1065875 (-) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  BHU02_RS05440 (BHU02_05340) lepB 1066007..1066537 (-) 531 WP_025015770.1 signal peptidase I -
  BHU02_RS05445 (BHU02_05345) - 1066562..1066786 (-) 225 WP_011374698.1 YozE family protein -
  BHU02_RS05450 (BHU02_05350) - 1066797..1067426 (-) 630 WP_011374699.1 YpmS family protein -
  BHU02_RS05455 (BHU02_05355) - 1067439..1068341 (-) 903 WP_025015769.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31792.79 Da        Isoelectric Point: 8.4679

>NTDB_id=197151 BHU02_RS05425 WP_251920186.1 1063340..1064206(-) (dprA) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARCYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=197151 BHU02_RS05425 WP_251920186.1 1063340..1064206(-) (dprA) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGTGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCACGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.264

100

0.983

Multiple sequence alignment