Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BHU02_RS02960 Genome accession   NZ_CP017271
Coordinates   590453..590881 (+) Length   142 a.a.
NCBI ID   WP_151384770.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585453..595881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS02945 (BHU02_02890) - 587031..588119 (+) 1089 WP_025016330.1 MraY family glycosyltransferase -
  BHU02_RS02950 (BHU02_02895) - 588146..588811 (-) 666 WP_025016329.1 YigZ family protein -
  BHU02_RS02955 (BHU02_02900) comFA 588873..590210 (+) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  BHU02_RS02960 (BHU02_02905) comFC 590453..590881 (+) 429 WP_151384770.1 ComF family protein Machinery gene
  BHU02_RS02965 (BHU02_02910) raiA 591008..591553 (+) 546 WP_011374202.1 ribosome-associated translation inhibitor RaiA -
  BHU02_RS02970 (BHU02_02915) secA 591802..594165 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  BHU02_RS02975 (BHU02_02920) prfB 594235..595351 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16619.07 Da        Isoelectric Point: 10.2048

>NTDB_id=197146 BHU02_RS02960 WP_151384770.1 590453..590881(+) (comFC) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=197146 BHU02_RS02960 WP_151384770.1 590453..590881(+) (comFC) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

97.183

100

0.972
  comFC Lactococcus lactis subsp. cremoris KW2

36.62

100

0.366

Multiple sequence alignment