Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BB313_RS06590 Genome accession   NZ_CP021865
Coordinates   1235115..1237313 (-) Length   732 a.a.
NCBI ID   WP_000622242.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230115..1242313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB313_RS06565 (BB313_06545) - 1230173..1230856 (-) 684 WP_000365673.1 tRNA (adenine(22)-N(1))-methyltransferase -
  BB313_RS06570 (BB313_06550) - 1230960..1231640 (-) 681 WP_000221657.1 DnaD domain-containing protein -
  BB313_RS06575 (BB313_06555) - 1231758..1232276 (-) 519 WP_000365343.1 adenine phosphoribosyltransferase -
  BB313_RS06580 (BB313_06560) - 1232399..1234963 (-) 2565 WP_017647748.1 GBS Bsp-like repeat-containing protein -
  BB313_RS06590 (BB313_06570) recJ 1235115..1237313 (-) 2199 WP_000622242.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BB313_RS06595 (BB313_06575) - 1237310..1238071 (-) 762 WP_000124588.1 SDR family NAD(P)-dependent oxidoreductase -
  BB313_RS06600 (BB313_06580) rnz 1238073..1239002 (-) 930 WP_000405388.1 ribonuclease Z -
  BB313_RS06605 (BB313_06585) - 1239044..1239691 (-) 648 WP_000568323.1 cystathionine beta-lyase -
  BB313_RS06610 (BB313_06590) hflX 1239684..1240921 (-) 1238 Protein_1220 GTPase HflX -
  BB313_RS06615 (BB313_06595) miaA 1241012..1241902 (-) 891 WP_001226483.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  BB313_RS06620 (BB313_06600) - 1242013..1242189 (+) 177 WP_000239229.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 82248.91 Da        Isoelectric Point: 4.5556

>NTDB_id=197126 BB313_RS06590 WP_000622242.1 1235115..1237313(-) (recJ) [Streptococcus agalactiae strain SG-M50]
MISAKYSWVLNNQKPDAGFFEASKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLHDPYLLNDMDKAVNRIRRAIEN
NETILVYGDYDADGMTSASIMKEALNMMGAEVQVYLPNRFTDGYGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQ
NQGVDVVVTDHHSMPADLPCAYAIIHPEHPDANYPFPYLAGCGVAFKVACALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLDDPNPAIELLTGFDDEESQAIAQMIDQKN
EERKEIVQTIFDQAMQMLDQTKPVQVLAKENWHPGVLGIVAGRILERTGQPVIVLNIEDGIAKGSARSVEALDIFQAFDQ
HRELFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDTVRDFEKLAPFGMDNKKP
VFLLKDFKVSQARVMGQNGAHLKLKLEQDGQALDLVAFNMGSQLQEFQQAQHLELAVTLSVNQWNGATTLQLMLEDARVD
GIQLFDIRSKASSLPHGVPILSQEEQSKEVILLTVPDHPQELKQMTQGKQFDAIYFKNEIPKNYFISGYGTRDQFAGLYK
TIYQFPEFDVRYKLKELSSYLHIPDILLIKMIQIFEELHFVTITEGIMTVNKEAEKRDISESQIYQELKETVKFQELMTL
GTPKEIYDFMMS

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=197126 BB313_RS06590 WP_000622242.1 1235115..1237313(-) (recJ) [Streptococcus agalactiae strain SG-M50]
ATGATATCTGCTAAGTATAGTTGGGTCCTCAATAACCAAAAGCCAGACGCTGGCTTTTTTGAGGCTTCAAAAAAAGAAAA
GATAAGTGAAGCGGTGGCTTCCTTAATTTATTCGCGAGGTATTAAGACATCAGCGGAATTACATCATTTTTTACAAACTA
ATTTGGAAAATCTCCATGATCCTTATTTGTTAAATGATATGGATAAAGCTGTTAATCGTATTAGACGAGCTATTGAAAAT
AATGAAACTATTTTAGTTTATGGAGACTATGATGCTGATGGAATGACATCAGCATCAATCATGAAAGAAGCTTTAAATAT
GATGGGAGCTGAAGTCCAGGTTTATCTCCCAAATCGCTTTACAGATGGTTATGGTCCCAATGAAAGTGTTTATAAATATT
TTATTGAACAACAAGATGTTTCATTAATCATTACGGTTGATAATGGTGTGGCAGGGCATGAAGCAATTGCATATGCTCAA
AATCAAGGTGTGGACGTGGTAGTTACTGATCATCACAGTATGCCAGCAGATTTACCTTGTGCTTATGCTATTATTCACCC
AGAACATCCTGATGCTAATTATCCATTTCCTTATTTAGCAGGGTGTGGTGTTGCTTTTAAAGTAGCTTGTGCTCTCTTAG
AAACAATCCCGACAGAAATGTTGGATTTGGTTGCTATTGGGACGATTGCAGATATGGTTAGCCTAACTGATGAAAATCGT
ATCATGGTAAAAGCTGGACTTGAAGTTATGAAAGATAGTGAAAGAATAGGCTTACAGGAGCTAATATCTCTATCAAATAT
TGATTTAAAAACACTAAATGAAGAAACTATTGGATTTAAAATTGCTCCACAATTAAACGCTTTAGGAAGACTTGATGACC
CTAATCCAGCTATTGAATTACTGACAGGGTTTGATGATGAAGAATCTCAAGCAATAGCCCAAATGATTGATCAAAAAAAT
GAAGAGCGAAAAGAAATCGTTCAAACTATCTTTGACCAAGCTATGCAAATGCTTGATCAAACAAAGCCTGTACAAGTTTT
AGCAAAAGAAAATTGGCATCCAGGGGTTTTAGGTATTGTGGCGGGTCGTATTTTAGAGAGAACTGGACAACCTGTTATTG
TTTTGAATATTGAAGATGGTATTGCTAAAGGAAGTGCCAGAAGTGTAGAAGCACTTGATATTTTTCAAGCTTTTGACCAG
CATCGAGAATTATTCATTGCTTTTGGAGGTCACAGCGGAGCAGCAGGCATGACTTTAGAGGAAAGTAAGGTGGGTGATCT
TTCTCAAGTTTTATGTGACTATATCTCTAAAAAACAATTGGACATGAGTCAGAAAAAAACTCTGACAATTGATAGTGAGC
TACGTTTTGACGAACTTAGTTTAGACACTGTTAGAGATTTTGAAAAGTTAGCGCCATTTGGAATGGATAATAAAAAGCCA
GTCTTTTTGTTAAAAGATTTTAAAGTGAGTCAAGCTAGAGTCATGGGGCAAAACGGTGCTCATCTGAAATTAAAACTAGA
ACAAGATGGACAAGCACTTGATTTGGTAGCATTTAATATGGGGAGTCAACTACAAGAGTTCCAACAAGCACAACATTTGG
AGTTAGCTGTCACTTTATCTGTTAATCAATGGAATGGTGCCACAACCTTACAATTAATGTTGGAGGATGCGCGTGTAGAC
GGTATTCAATTATTTGATATTAGAAGCAAAGCAAGTAGCTTACCTCATGGAGTGCCAATCCTGTCTCAAGAAGAGCAGAG
CAAAGAAGTTATTCTTTTGACTGTTCCCGATCATCCACAAGAATTAAAACAAATGACTCAAGGTAAACAGTTTGATGCCA
TCTATTTTAAAAATGAGATACCAAAAAATTATTTTATATCTGGTTATGGTACACGTGATCAGTTTGCTGGTTTATATAAA
ACAATATATCAATTCCCAGAATTTGACGTTCGTTATAAGTTAAAAGAGCTCAGTTCCTACCTTCATATCCCTGATATTTT
ATTAATTAAAATGATTCAAATTTTTGAAGAACTACATTTTGTTACGATTACAGAGGGGATTATGACAGTCAATAAAGAAG
CAGAAAAGCGAGATATCTCTGAGAGTCAAATTTATCAAGAATTAAAAGAGACAGTTAAGTTTCAAGAATTAATGACTTTA
GGGACACCTAAAGAAATATATGATTTTATGATGAGTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-726)

DHHA1 domain (DHHA1)

(317-433)

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.858

100

0.653
  recJ Bacillus subtilis subsp. subtilis str. 168

36.01

100

0.38