Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BHY08_RS08410 Genome accession   NZ_CP017267
Coordinates   1762634..1764445 (-) Length   603 a.a.
NCBI ID   WP_071457442.1    Uniprot ID   -
Organism   Vagococcus teuberi strain DSM 21459     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757634..1769445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHY08_RS08385 (BHY08_08390) - 1758808..1759692 (-) 885 WP_071457438.1 RluA family pseudouridine synthase -
  BHY08_RS08390 (BHY08_08395) - 1759689..1760507 (-) 819 WP_071457439.1 NAD kinase -
  BHY08_RS08395 (BHY08_08400) - 1760497..1761171 (-) 675 WP_071457440.1 GTP pyrophosphokinase -
  BHY08_RS08400 (BHY08_08405) - 1761306..1761887 (+) 582 WP_084657234.1 CYTH domain-containing protein -
  BHY08_RS08405 (BHY08_08410) - 1761991..1762590 (+) 600 WP_071457441.1 DsbA family protein -
  BHY08_RS08410 (BHY08_08415) pepF 1762634..1764445 (-) 1812 WP_071457442.1 oligoendopeptidase F Regulator
  BHY08_RS08415 (BHY08_08420) - 1764469..1765614 (-) 1146 WP_071457443.1 competence protein CoiA -
  BHY08_RS08420 (BHY08_08425) queG 1765718..1766866 (+) 1149 WP_071457444.1 tRNA epoxyqueuosine(34) reductase QueG -
  BHY08_RS08425 (BHY08_08430) yjeM 1767055..1768554 (+) 1500 WP_071457445.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  BHY08_RS08430 (BHY08_08435) - 1768588..1768797 (-) 210 WP_071457446.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68856.86 Da        Isoelectric Point: 4.8715

>NTDB_id=197109 BHY08_RS08410 WP_071457442.1 1762634..1764445(-) (pepF) [Vagococcus teuberi strain DSM 21459]
MSETKQLPNRSELPEELTWDLTPIFASDDAFNEALTSLTAELEKASEYQGTLKNGAKAFLSAIEYVLSIHRTTEKIYVYS
HLKNDQDTSDALYQGLYAKASTIAAKAGEAVSWFGPEVLTLSDDTIDSYFKEEAGLEIYRHFITQITADRAHTLSEKEEA
LLAGASEIFSASSHTFSVLNNADLEFPIVTDEDGQKVQLSSGMYGQLMESTNREVRKEAFEGLYKVYKQFRNTFASTLSS
HVKKHNFNAQIRNYSSAREAALSANHIPESVYDTLLNVVHKNLPLLHRYVALRKRLLNVNELHMYDMYTPILGDAPIRYT
YDEAKLKSLEGLSPLGEEYLEIVQEAYSDRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHESLNHLFTLVHEMGHSVHS
YYTRKNQPYVYGDYSIFLAEIASTTNENLLTDHLLKTEKDPKVRAFILNHYLDGVKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSDYLSEYYGELNAKYYGDSVERDSEIAYEWSRIPHFYYNYYVYQYSTGFSAATALADKIIRKEEGALENYLTFLKSG
SSDYPIEVMKRAGVDMTQSAYIEETMKVFEARLDELEALIDSF

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=197109 BHY08_RS08410 WP_071457442.1 1762634..1764445(-) (pepF) [Vagococcus teuberi strain DSM 21459]
ATGAGTGAAACAAAACAATTACCAAATCGTTCGGAATTACCAGAGGAATTAACATGGGATTTAACTCCTATTTTTGCATC
AGATGATGCGTTTAATGAGGCGTTAACATCATTGACTGCAGAATTAGAAAAAGCAAGTGAGTATCAAGGAACATTAAAAA
ATGGTGCGAAAGCTTTTCTATCAGCGATTGAATATGTATTGTCTATTCATCGTACGACAGAAAAAATTTATGTGTACTCA
CATTTAAAAAATGACCAAGACACAAGTGATGCACTTTACCAAGGACTTTATGCAAAAGCAAGTACTATTGCTGCTAAAGC
AGGGGAAGCTGTTTCATGGTTTGGCCCAGAAGTGTTAACGTTATCTGATGATACGATTGATTCATATTTTAAAGAAGAAG
CAGGTTTAGAAATCTATCGTCACTTTATTACTCAAATTACAGCAGATAGAGCTCATACGTTATCTGAAAAAGAAGAAGCA
CTATTAGCTGGAGCAAGTGAAATATTCTCAGCATCAAGTCATACATTTTCTGTATTAAACAATGCTGATTTAGAGTTTCC
AATTGTGACTGATGAAGATGGACAAAAGGTGCAATTATCTTCAGGTATGTATGGTCAATTAATGGAAAGTACAAATCGTG
AAGTACGTAAAGAAGCCTTTGAAGGGTTATATAAAGTTTATAAACAATTTAGAAATACATTTGCTAGCACATTATCGTCT
CATGTAAAAAAACATAATTTCAATGCTCAAATCAGAAATTACAGTTCAGCACGTGAAGCAGCTTTAAGTGCTAACCATAT
TCCTGAATCTGTTTACGATACATTACTTAATGTGGTACATAAAAACTTACCATTGCTACATCGTTACGTGGCATTGCGTA
AACGACTATTAAATGTTAACGAACTACATATGTATGATATGTATACACCAATATTAGGAGATGCACCAATTCGTTATACT
TATGACGAGGCAAAATTAAAATCACTTGAAGGGTTATCTCCATTAGGTGAAGAATATTTAGAAATCGTTCAAGAAGCTTA
CAGCGATCGCTGGATTGATGTGGTTGAAAATAAAGGCAAACGCAGTGGTGCTTATTCTTCAGGAAGTTATGATACAAAAC
CTTATATTTTATTAAACTGGCATGAAAGTTTAAATCATTTATTCACGTTAGTTCATGAAATGGGACACAGTGTTCACAGT
TACTACACACGAAAAAATCAACCTTATGTATATGGTGATTATTCTATTTTCTTAGCAGAAATTGCCTCAACAACGAATGA
AAACTTATTAACAGATCATTTGTTAAAAACAGAAAAAGATCCTAAAGTTAGAGCCTTTATCTTAAATCATTATTTAGATG
GTGTGAAAGGAACAATCTTTAGACAAACACAATTTGCTGAATTTGAACATTTTATTCACACTGAAGATGCAAAAGGAACA
CCGTTAACAAGCGATTACTTAAGCGAGTATTATGGTGAGTTAAATGCTAAATACTACGGTGATTCAGTAGAACGTGACTC
TGAAATTGCTTATGAGTGGAGCCGTATTCCGCATTTCTACTATAACTACTATGTGTATCAATACTCAACTGGATTTTCAG
CAGCGACAGCTTTAGCGGATAAAATTATCCGTAAAGAAGAAGGTGCGTTAGAAAACTACTTAACATTCTTGAAATCAGGA
AGTAGTGATTATCCAATCGAAGTGATGAAACGCGCGGGAGTTGATATGACGCAATCTGCTTATATTGAAGAAACAATGAA
AGTCTTTGAAGCTCGTTTAGATGAGTTAGAAGCGTTAATTGATTCATTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.342

0.539

Multiple sequence alignment