Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAM18149p_RS10305 Genome accession   NZ_CP017261
Coordinates   1961670..1963034 (-) Length   454 a.a.
NCBI ID   WP_016386262.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain FAM18149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956670..1968034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAM18149p_RS10280 (FAM18149p_09665) - 1957356..1957991 (-) 636 Protein_1889 ABC transporter permease subunit -
  FAM18149p_RS10285 (FAM18149p_09670) - 1958045..1959061 (-) 1017 WP_011674977.1 IS30 family transposase -
  FAM18149p_RS10290 - 1959163..1959324 (-) 162 Protein_1891 ABC transporter permease -
  FAM18149p_RS10295 (FAM18149p_09675) - 1959342..1960229 (-) 888 WP_003603253.1 ABC transporter ATP-binding protein -
  FAM18149p_RS10300 (FAM18149p_09680) - 1960532..1961647 (-) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  FAM18149p_RS10305 (FAM18149p_09685) radA 1961670..1963034 (-) 1365 WP_016386262.1 DNA repair protein RadA Machinery gene
  FAM18149p_RS10310 (FAM18149p_09690) - 1963051..1963593 (-) 543 WP_003567256.1 dUTP diphosphatase -
  FAM18149p_RS10315 (FAM18149p_09695) - 1963814..1964104 (+) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  FAM18149p_RS10320 (FAM18149p_09700) - 1964221..1964598 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  FAM18149p_RS10325 (FAM18149p_09705) - 1964843..1966162 (+) 1320 WP_003603256.1 C1 family peptidase -
  FAM18149p_RS10335 (FAM18149p_09710) - 1966521..1967867 (+) 1347 WP_003603257.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49184.51 Da        Isoelectric Point: 7.4217

>NTDB_id=197071 FAM18149p_RS10305 WP_016386262.1 1961670..1963034(-) (radA) [Lacticaseibacillus paracasei strain FAM18149]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTATGSRVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=197071 FAM18149p_RS10305 WP_016386262.1 1961670..1963034(-) (radA) [Lacticaseibacillus paracasei strain FAM18149]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGCCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAACCGGCAGTAGGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTGTCAGGGCAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGTGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGGGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTCGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAAACGGATTTTTGTACCCCGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.212

99.78

0.681
  radA Streptococcus pneumoniae Rx1

68.212

99.78

0.681
  radA Streptococcus pneumoniae D39

68.212

99.78

0.681
  radA Streptococcus pneumoniae R6

68.212

99.78

0.681
  radA Streptococcus pneumoniae TIGR4

68.212

99.78

0.681
  radA Streptococcus mitis SK321

67.991

99.78

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

64.758

100

0.648

Multiple sequence alignment