Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FORMA_RS06195 Genome accession   NZ_CP017259
Coordinates   1344568..1345926 (+) Length   452 a.a.
NCBI ID   WP_069674841.1    Uniprot ID   A0A1D7XT11
Organism   Formosa sp. Hel3_A1_48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339568..1350926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORMA_RS06170 (FORMA_12890) - 1340254..1341063 (-) 810 WP_069674837.1 glycogen/starch synthase -
  FORMA_RS06175 (FORMA_12900) panC 1341169..1342020 (+) 852 WP_069674838.1 pantoate--beta-alanine ligase -
  FORMA_RS06180 (FORMA_12910) panD 1342034..1342384 (+) 351 WP_069674839.1 aspartate 1-decarboxylase -
  FORMA_RS06185 (FORMA_12920) - 1342390..1343367 (+) 978 WP_069675467.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FORMA_RS06190 (FORMA_12930) - 1343429..1344568 (+) 1140 WP_069674840.1 alpha/beta hydrolase-fold protein -
  FORMA_RS06195 (FORMA_12940) radA 1344568..1345926 (+) 1359 WP_069674841.1 DNA repair protein RadA Machinery gene
  FORMA_RS06200 (FORMA_12950) - 1345974..1346384 (-) 411 WP_069674842.1 BrxA/BrxB family bacilliredoxin -
  FORMA_RS06205 (FORMA_12960) - 1346527..1347252 (+) 726 WP_069674843.1 TerB family tellurite resistance protein -
  FORMA_RS06210 (FORMA_12970) - 1347270..1349519 (-) 2250 WP_069674844.1 TonB-dependent receptor -
  FORMA_RS06215 (FORMA_12980) - 1349602..1350255 (+) 654 WP_069675468.1 metal-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49568.38 Da        Isoelectric Point: 8.1596

>NTDB_id=197042 FORMA_RS06195 WP_069674841.1 1344568..1345926(+) (radA) [Formosa sp. Hel3_A1_48]
MAKLKTTFFCQSCGAQYAKWQGQCTSCKSWNTIVEELIKKPEKVAWKTSSSSAKERVSTPLKISEIDTTKTPRLDTTDAE
LNRVLGGGIVPGSLILLGGEPGIGKSTLMLQLSLKLPYKTLYISGEESQKQIKLRAERIHPSSEQCYILTETKTQYIFKQ
IEDLAPDILVIDSIQTLQSDVLEASAGSVSQIKQCTSELMKFAKETATPVILIGHITKDGSIAGPKILEHMVDTVLQFEG
DRNHVFRILRAHKNRFGSTHELGIYEMQGTGLRIVENPSEILISKKDTALSGNAIAVTLEGMRPLLVEVQALVSSAVYGT
PQRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNNDDALSDNFCFAAEVGLSGE
IRPVQRVEQRIMEAEKLGFTAIFISKHNKLGLKPNKIEVHLISKIEDLLRFI

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=197042 FORMA_RS06195 WP_069674841.1 1344568..1345926(+) (radA) [Formosa sp. Hel3_A1_48]
ATGGCAAAACTTAAAACAACATTCTTTTGTCAGAGCTGTGGTGCACAATATGCCAAGTGGCAGGGGCAATGCACTTCCTG
TAAGTCATGGAATACGATTGTTGAAGAACTGATCAAAAAGCCTGAAAAAGTTGCTTGGAAAACAAGCAGTAGTTCAGCCA
AAGAACGGGTTTCTACCCCTCTAAAAATATCAGAAATTGACACGACTAAAACCCCTCGATTGGATACCACCGATGCGGAA
CTCAACAGGGTTTTAGGGGGTGGTATTGTACCGGGATCACTTATTTTGTTGGGCGGTGAACCCGGGATTGGCAAAAGCAC
TCTGATGCTCCAATTATCTTTAAAATTGCCCTACAAAACCCTGTATATTTCGGGTGAAGAAAGCCAAAAACAAATAAAAC
TTCGTGCAGAGCGCATTCACCCAAGTAGCGAACAGTGTTATATTTTAACCGAAACGAAAACGCAATACATTTTCAAACAG
ATCGAGGATCTTGCTCCTGACATCCTTGTTATTGATTCTATTCAAACGCTTCAAAGCGATGTTTTGGAAGCATCGGCGGG
GAGTGTTTCTCAAATTAAGCAGTGCACTTCAGAATTGATGAAGTTTGCTAAAGAGACAGCGACACCTGTCATTCTTATTG
GGCATATTACTAAAGATGGCAGCATAGCAGGGCCTAAAATTTTGGAGCATATGGTAGACACTGTATTGCAGTTTGAAGGG
GACCGCAATCATGTTTTCAGGATATTGCGCGCGCACAAAAATCGTTTTGGTTCCACTCATGAGCTGGGAATATATGAAAT
GCAAGGCACTGGCTTAAGAATCGTAGAAAATCCTTCAGAGATTTTAATTTCAAAAAAAGACACTGCTTTATCTGGTAATG
CTATTGCTGTTACTTTGGAAGGGATGCGGCCATTGTTGGTAGAAGTTCAGGCCTTAGTGAGTTCTGCAGTCTATGGCACG
CCACAACGCAGTGCTACAGGGTTCAATGCGAAGCGGCTCAATATGTTACTGGCTGTTCTTGAGAAACGCGCTGGCTTTCG
CTTGGGGGCCAAGGATGTTTTTTTGAACATCACGGGCGGGATTAGTGTGGATGATCCTGCTATTGATTTGGCGGTAGTTG
CAGCCATTTTATCATCAAATAACGACGATGCCCTAAGCGATAATTTTTGTTTTGCAGCTGAGGTCGGTCTATCTGGAGAA
ATCCGTCCTGTGCAACGCGTTGAGCAGCGCATTATGGAGGCCGAAAAACTTGGTTTTACGGCTATTTTCATTTCGAAGCA
CAATAAGTTGGGGCTTAAACCCAACAAAATAGAAGTCCACTTAATCTCTAAAATTGAAGATCTGTTGCGCTTTATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-220)

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7XT11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.769

100

0.511
  radA Streptococcus mitis NCTC 12261

48.786

100

0.489
  radA Streptococcus pneumoniae Rx1

48.565

100

0.487
  radA Streptococcus pneumoniae D39

48.565

100

0.487
  radA Streptococcus pneumoniae R6

48.565

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.565

100

0.487
  radA Streptococcus mitis SK321

48.565

100

0.487

Multiple sequence alignment