Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CPIN18021_RS01100 Genome accession   NZ_CP017258
Coordinates   217706..218092 (+) Length   128 a.a.
NCBI ID   WP_078422835.1    Uniprot ID   A0A1S6U5V4
Organism   Campylobacter pinnipediorum subsp. caledonicus strain M341/11/05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 212706..223092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN18021_RS01075 (CPIN18021_0215) - 213635..214294 (+) 660 WP_078424198.1 Crp/Fnr family transcriptional regulator -
  CPIN18021_RS01080 (CPIN18021_0216) - 214326..215504 (+) 1179 WP_226995988.1 replication-associated recombination protein A -
  CPIN18021_RS01085 (CPIN18021_0217) moaC 215746..216219 (+) 474 WP_226996001.1 cyclic pyranopterin monophosphate synthase MoaC -
  CPIN18021_RS01090 (CPIN18021_0218) - 216200..216463 (+) 264 WP_226995989.1 DUF493 family protein -
  CPIN18021_RS01095 (CPIN18021_0219) - 216476..217693 (+) 1218 WP_078424201.1 hypothetical protein -
  CPIN18021_RS01100 (CPIN18021_0220) dprB 217706..218092 (+) 387 WP_078422835.1 Holliday junction resolvase RuvX Machinery gene
  CPIN18021_RS01105 (CPIN18021_0221) - 218105..219739 (+) 1635 WP_226995990.1 multidrug ABC transporter permease/ATP-binding protein -
  CPIN18021_RS01110 (CPIN18021_0222) - 219789..220502 (+) 714 WP_078422836.1 NADH dehydrogenase -
  CPIN18021_RS01115 (CPIN18021_0223) - 220502..222871 (+) 2370 WP_078424202.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14392.70 Da        Isoelectric Point: 8.4625

>NTDB_id=197028 CPIN18021_RS01100 WP_078422835.1 217706..218092(+) (dprB) [Campylobacter pinnipediorum subsp. caledonicus strain M341/11/05]
MNDEKFIAIDIGLKRIGLAFGFKGVVVPLTPILRKNRNQASRDISRVLDEYNADILVVGVPIGGSSEDEMRRRILHFVSL
LDFTGKIIYQDESFSSFEAADFVKDKRDGKLDSMAALIILKRYLQISA

Nucleotide


Download         Length: 387 bp        

>NTDB_id=197028 CPIN18021_RS01100 WP_078422835.1 217706..218092(+) (dprB) [Campylobacter pinnipediorum subsp. caledonicus strain M341/11/05]
ATGAATGATGAAAAATTTATAGCCATAGATATCGGCTTAAAGCGTATAGGATTGGCTTTCGGATTTAAGGGCGTTGTTGT
TCCTCTTACGCCTATACTTAGGAAAAATCGCAACCAAGCATCAAGAGATATCAGTAGGGTTTTAGATGAATATAATGCTG
ATATTTTGGTTGTTGGAGTGCCTATTGGTGGAAGTAGTGAGGATGAGATGAGAAGAAGAATATTGCATTTTGTATCCTTG
CTTGATTTTACTGGAAAGATTATATATCAAGATGAATCGTTTAGCAGCTTTGAGGCTGCTGATTTTGTAAAAGATAAAAG
AGATGGTAAGCTTGATAGCATGGCTGCACTAATAATACTAAAAAGATATTTGCAAATATCTGCATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S6U5V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.062

100

0.484

Multiple sequence alignment