Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   BFO62_RS01625 Genome accession   NZ_CP017257
Coordinates   273587..274285 (+) Length   232 a.a.
NCBI ID   WP_076612544.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 268587..279285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS01605 (BFO62_01510) trpC 269668..270450 (-) 783 WP_002221587.1 indole-3-glycerol phosphate synthase TrpC -
  BFO62_RS01610 (BFO62_01515) - 270501..271457 (-) 957 WP_002221585.1 YheT family hydrolase -
  BFO62_RS01615 (BFO62_01520) murJ 271590..273128 (-) 1539 WP_002221584.1 murein biosynthesis integral membrane protein MurJ -
  BFO62_RS14270 - 273186..273293 (+) 108 Protein_274 IS5/IS1182 family transposase -
  BFO62_RS01625 (BFO62_01525) dsbA1 273587..274285 (+) 699 WP_076612544.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  BFO62_RS01630 (BFO62_01530) amgK 274342..275346 (-) 1005 WP_076612545.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  BFO62_RS01635 (BFO62_01535) - 275416..277824 (+) 2409 WP_002245292.1 LPS-assembly protein LptD -
  BFO62_RS01640 (BFO62_01540) - 277929..278954 (+) 1026 WP_002249950.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25255.83 Da        Isoelectric Point: 5.1392

>NTDB_id=196985 BFO62_RS01625 WP_076612544.1 273587..274285(+) (dsbA1) [Neisseria meningitidis strain COL-201504-11]
MKSRQLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=196985 BFO62_RS01625 WP_076612544.1 273587..274285(+) (dsbA1) [Neisseria meningitidis strain COL-201504-11]
ATGAAATCCAGACAACTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment