Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BL1202_RS24275 Genome accession   NZ_CP017247
Coordinates   1628542..1628949 (-) Length   135 a.a.
NCBI ID   WP_052014836.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL1202     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623542..1633949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1202_RS08425 (BL1202_01725) queC 1624694..1625353 (+) 660 WP_003181098.1 7-cyano-7-deazaguanine synthase QueC -
  BL1202_RS08430 (BL1202_01726) queD 1625356..1625796 (+) 441 WP_003181100.1 6-carboxytetrahydropterin synthase QueD -
  BL1202_RS08435 (BL1202_01727) queE 1625789..1626520 (+) 732 WP_003181103.1 7-carboxy-7-deazaguanine synthase QueE -
  BL1202_RS08440 (BL1202_01728) queF 1626542..1627039 (+) 498 WP_009328607.1 preQ(1) synthase -
  BL1202_RS24075 (BL1202_01729) - 1627712..1627837 (-) 126 WP_016885803.1 hypothetical protein -
  BL1202_RS24270 (BL1202_01731) - 1628101..1628484 (-) 384 WP_069500445.1 tetratricopeptide repeat protein -
  BL1202_RS24275 (BL1202_01732) rapC 1628542..1628949 (-) 408 WP_052014836.1 RapH N-terminal domain-containing protein Regulator
  BL1202_RS08460 (BL1202_01733) - 1629317..1630108 (-) 792 WP_003181208.1 DUF817 domain-containing protein -
  BL1202_RS08465 (BL1202_01734) - 1630238..1630459 (-) 222 WP_003181209.1 helix-turn-helix domain-containing protein -
  BL1202_RS08470 (BL1202_01735) - 1630470..1630952 (-) 483 WP_003181211.1 DUF2975 domain-containing protein -
  BL1202_RS08475 (BL1202_01736) - 1631493..1631756 (-) 264 WP_315898125.1 hypothetical protein -
  BL1202_RS08480 (BL1202_01737) - 1631834..1633267 (-) 1434 Protein_1645 lipase family protein -
  BL1202_RS08485 (BL1202_01739) - 1633312..1633656 (+) 345 WP_003181219.1 DUF1433 domain-containing protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 16311.94 Da        Isoelectric Point: 6.4838

>NTDB_id=196908 BL1202_RS24275 WP_052014836.1 1628542..1628949(-) (rapC) [Bacillus licheniformis strain BL1202]
MKQLIPSSKVGVKIHEWYKMIREFSVPDAEALKEEVEKEINQMEEDQDLLLYYQLMCFRHQLMLEYLEPTNKRKQGQSIN
KLLAQIEEPRRDLNGLLSYYSFFFRGMYEFEKKQYIKAIESYRNAEKQLALITML

Nucleotide


Download         Length: 408 bp        

>NTDB_id=196908 BL1202_RS24275 WP_052014836.1 1628542..1628949(-) (rapC) [Bacillus licheniformis strain BL1202]
GTGAAACAGTTAATACCCTCGTCAAAAGTCGGAGTGAAAATCCACGAATGGTATAAAATGATAAGAGAGTTTAGCGTACC
GGATGCAGAGGCTTTAAAAGAAGAAGTAGAGAAGGAAATTAATCAAATGGAAGAAGATCAGGACTTACTCCTTTACTATC
AGTTGATGTGTTTTAGACATCAATTAATGTTAGAATATTTAGAACCTACTAACAAAAGAAAACAAGGACAATCAATAAAC
AAATTGTTGGCCCAAATCGAGGAGCCTCGAAGAGATTTAAATGGCCTCCTTAGTTACTACTCATTTTTCTTTAGGGGCAT
GTATGAATTTGAGAAAAAACAGTACATCAAAGCAATAGAGTCTTATCGAAACGCAGAAAAACAGTTGGCTCTCATTACGA
TGTTATAG

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

54.545

97.778

0.533
  rapF Bacillus subtilis subsp. subtilis str. 168

50.746

99.259

0.504

Multiple sequence alignment