Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BL1202_RS13965 Genome accession   NZ_CP017247
Coordinates   2687474..2688538 (-) Length   354 a.a.
NCBI ID   WP_069500612.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL1202     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2682474..2693538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1202_RS13920 (BL1202_02850) tapA 2682968..2683696 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  BL1202_RS13925 (BL1202_02851) - 2683973..2684293 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  BL1202_RS13930 (BL1202_02852) - 2684323..2684505 (-) 183 WP_003183456.1 YqzE family protein -
  BL1202_RS13935 (BL1202_02853) comGG 2684594..2684959 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  BL1202_RS13940 (BL1202_02854) comGF 2684972..2685460 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  BL1202_RS13945 comGE 2685369..2685716 (-) 348 WP_026699160.1 competence type IV pilus minor pilin ComGE -
  BL1202_RS13950 (BL1202_02855) comGD 2685700..2686137 (-) 438 WP_026699159.1 competence type IV pilus minor pilin ComGD -
  BL1202_RS13955 (BL1202_02856) comGC 2686143..2686436 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  BL1202_RS13960 (BL1202_02857) comGB 2686450..2687484 (-) 1035 WP_026699158.1 competence type IV pilus assembly protein ComGB Machinery gene
  BL1202_RS13965 (BL1202_02858) comGA 2687474..2688538 (-) 1065 WP_069500612.1 competence type IV pilus ATPase ComGA Machinery gene
  BL1202_RS13970 (BL1202_02859) - 2688695..2689534 (-) 840 WP_003183480.1 STAS domain-containing protein -
  BL1202_RS13980 (BL1202_02861) - 2689776..2690153 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BL1202_RS13985 (BL1202_02862) - 2690362..2690607 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  BL1202_RS13990 (BL1202_02863) - 2690645..2691283 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  BL1202_RS13995 (BL1202_02864) - 2691439..2691612 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  BL1202_RS14000 (BL1202_02865) - 2691673..2691987 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  BL1202_RS14005 (BL1202_02866) - 2692003..2693112 (-) 1110 WP_003183488.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39784.36 Da        Isoelectric Point: 9.0871

>NTDB_id=196879 BL1202_RS13965 WP_069500612.1 2687474..2688538(-) (comGA) [Bacillus licheniformis strain BL1202]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDGLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINREPVYLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLMLFTGPTGSGKTTTLYSLIDY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLELGVDMTEIEQTLVAVSAQRLVDIVCQFCGDSCTLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GGIKTDTLKMLIRKGIALGYLPSKTYERWIGHED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=196879 BL1202_RS13965 WP_069500612.1 2687474..2688538(-) (comGA) [Bacillus licheniformis strain BL1202]
TTGTACACGATCGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTACGCTTCAGGATTGATGACGAACTGTTTCAAAAAGACGGATTAACGAGAAATGAGTGCT
CTAGACTCATTTCTCACTTTAAATTTCTTTCTTCGATGGACATTGGCGAGAGACGGCTGCCGCAAAGCGGGGCTTTAACT
CTTTATATCAACCGTGAGCCCGTTTATTTAAGGATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTCCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATGCTTTTCACCGGCCCGACAGGCTCGGGAAAAACGACAACACTCTATTCTTTAATTGACTAC
GCCAAGCGGCATTTTAAGCGAAATATCATTACGTTGGAAGACCCGGTCGAATCAAGAAGCGAAAACATTTTGCAAGTACA
AGTGAACGAAAAAGCGGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTGCGCCACGATCCGGACATGATCATCCTAG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACGGGACACCTTGTTCTATCGAGCATGCAT
GCGAAAAATGCTAAAGGTGCGATATACAGGCTGCTCGAGCTCGGCGTTGATATGACAGAAATTGAACAAACATTGGTCGC
AGTCAGCGCCCAGCGTCTTGTCGATATCGTCTGTCAGTTTTGCGGCGACAGCTGCACTTTGTATTGCAGATTGTCGAGAC
CAGTTAGAAGAGCAAGCGTCTTTGAACTTTTGTACGGAAAAAGCCTTAATCTCTGCATCGAAGAAGCAAAAGGCAGATGC
GGTGGCATCAAAACAGACACCTTAAAAATGCTGATCCGCAAGGGAATAGCACTCGGATATCTGCCGTCGAAAACTTATGA
ACGCTGGATAGGGCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

66.384

100

0.664

Multiple sequence alignment