Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BL1202_RS13905 | Genome accession | NZ_CP017247 |
| Coordinates | 2681079..2681414 (+) | Length | 111 a.a. |
| NCBI ID | WP_006637528.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain BL1202 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2676079..2686414
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BL1202_RS13880 (BL1202_02843) | gcvT | 2676512..2677606 (-) | 1095 | WP_003183436.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BL1202_RS13890 (BL1202_02844) | - | 2678198..2679877 (+) | 1680 | WP_003183439.1 | DEAD/DEAH box helicase | - |
| BL1202_RS13895 (BL1202_02845) | - | 2679884..2680678 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| BL1202_RS13900 (BL1202_02846) | sinI | 2680869..2681045 (+) | 177 | WP_003183444.1 | anti-repressor SinI | Regulator |
| BL1202_RS13905 (BL1202_02847) | sinR | 2681079..2681414 (+) | 336 | WP_006637528.1 | transcriptional regulator SinR | Regulator |
| BL1202_RS13910 (BL1202_02848) | tasA | 2681519..2682313 (-) | 795 | WP_003183447.1 | biofilm matrix protein TasA | - |
| BL1202_RS13915 (BL1202_02849) | sipW | 2682387..2682971 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| BL1202_RS13920 (BL1202_02850) | tapA | 2682968..2683696 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BL1202_RS13925 (BL1202_02851) | - | 2683973..2684293 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| BL1202_RS13930 (BL1202_02852) | - | 2684323..2684505 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| BL1202_RS13935 (BL1202_02853) | comGG | 2684594..2684959 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| BL1202_RS13940 (BL1202_02854) | comGF | 2684972..2685460 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| BL1202_RS13945 | comGE | 2685369..2685716 (-) | 348 | WP_026699160.1 | competence type IV pilus minor pilin ComGE | - |
| BL1202_RS13950 (BL1202_02855) | comGD | 2685700..2686137 (-) | 438 | WP_026699159.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12963.59 Da Isoelectric Point: 5.9495
>NTDB_id=196876 BL1202_RS13905 WP_006637528.1 2681079..2681414(+) (sinR) [Bacillus licheniformis strain BL1202]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=196876 BL1202_RS13905 WP_006637528.1 2681079..2681414(+) (sinR) [Bacillus licheniformis strain BL1202]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |