Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH89_RS20200 Genome accession   NZ_CP021844
Coordinates   3965776..3966252 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain EC1515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3960776..3971252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH89_RS20165 (CDH89_20150) - 3960878..3961366 (-) 489 Protein_3735 DUF5983 family protein -
  CDH89_RS20170 (CDH89_20155) cbtA 3961363..3961740 (-) 378 WP_039025883.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CDH89_RS20175 (CDH89_20160) - 3961829..3962197 (-) 369 WP_039025882.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CDH89_RS20180 (CDH89_20165) - 3962247..3962801 (-) 555 WP_088172326.1 antitoxin of toxin-antitoxin stability system -
  CDH89_RS20185 (CDH89_20170) istA 3962982..3964523 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  CDH89_RS20190 (CDH89_20175) istB 3964538..3965284 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  CDH89_RS29140 - 3965355..3965477 (-) 123 WP_283667214.1 hypothetical protein -
  CDH89_RS20195 (CDH89_20180) - 3965492..3965713 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  CDH89_RS20200 (CDH89_20185) radC 3965776..3966252 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  CDH89_RS20205 (CDH89_20190) - 3966268..3966753 (-) 486 WP_001563926.1 antirestriction protein -
  CDH89_RS20210 (CDH89_20195) - 3966845..3967663 (-) 819 WP_001598214.1 DUF932 domain-containing protein -
  CDH89_RS20220 (CDH89_20205) - 3968002..3970848 (-) 2847 WP_088172325.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=196706 CDH89_RS20200 WP_001186774.1 3965776..3966252(-) (radC) [Escherichia coli strain EC1515]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=196706 CDH89_RS20200 WP_001186774.1 3965776..3966252(-) (radC) [Escherichia coli strain EC1515]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment