Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CDH89_RS06750 Genome accession   NZ_CP021844
Coordinates   1317415..1318152 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC1515     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312415..1323152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH89_RS06725 (CDH89_06715) yfiL 1312573..1312938 (-) 366 WP_024248389.1 DUF2799 domain-containing protein -
  CDH89_RS06730 (CDH89_06720) aroF 1313148..1314218 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CDH89_RS06735 (CDH89_06725) tyrA 1314229..1315350 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CDH89_RS06740 (CDH89_06730) pheA 1315393..1316553 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CDH89_RS28150 pheL 1316652..1316699 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CDH89_RS06745 (CDH89_06735) raiA 1316803..1317144 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CDH89_RS06750 (CDH89_06740) comL 1317415..1318152 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CDH89_RS06755 (CDH89_06745) rluD 1318287..1319267 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CDH89_RS06760 (CDH89_06750) yfiH 1319264..1319995 (+) 732 WP_021577822.1 purine nucleoside phosphorylase YfiH -
  CDH89_RS06765 (CDH89_06755) clpC 1320125..1322698 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=196672 CDH89_RS06750 WP_000197686.1 1317415..1318152(-) (comL) [Escherichia coli strain EC1515]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=196672 CDH89_RS06750 WP_000197686.1 1317415..1318152(-) (comL) [Escherichia coli strain EC1515]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCAGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment