Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH89_RS06215 Genome accession   NZ_CP021844
Coordinates   1238467..1238949 (-) Length   160 a.a.
NCBI ID   WP_064574854.1    Uniprot ID   -
Organism   Escherichia coli strain EC1515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233467..1243949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH89_RS06190 (CDH89_06180) - 1235324..1235452 (-) 129 Protein_1144 DUF4942 domain-containing protein -
  CDH89_RS06195 (CDH89_06185) - 1235825..1237156 (+) 1332 WP_088172179.1 AAA family ATPase -
  CDH89_RS06200 (CDH89_06190) - 1237156..1237857 (+) 702 WP_088172178.1 HNH endonuclease -
  CDH89_RS28790 - 1238149..1238325 (-) 177 WP_231339047.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CDH89_RS06210 (CDH89_06200) - 1238344..1238463 (-) 120 Protein_1148 DUF987 family protein -
  CDH89_RS06215 (CDH89_06205) radC 1238467..1238949 (-) 483 WP_064574854.1 DNA repair protein RadC Machinery gene
  CDH89_RS06220 (CDH89_06210) - 1238958..1239416 (-) 459 WP_088172177.1 antirestriction protein -
  CDH89_RS06225 (CDH89_06215) - 1239502..1239738 (-) 237 WP_088172176.1 DUF905 domain-containing protein -
  CDH89_RS06230 (CDH89_06220) - 1239816..1240226 (-) 411 WP_088172175.1 hypothetical protein -
  CDH89_RS06235 (CDH89_06225) - 1240293..1240730 (-) 438 WP_008815077.1 hypothetical protein -
  CDH89_RS06240 (CDH89_06230) - 1240772..1241308 (-) 537 WP_088172174.1 DUF4339 domain-containing protein -
  CDH89_RS06245 (CDH89_06235) - 1241334..1242044 (-) 711 Protein_1155 DeoR family transcriptional regulator -
  CDH89_RS06250 (CDH89_06240) - 1242253..1243077 (-) 825 WP_088172173.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17770.57 Da        Isoelectric Point: 7.5724

>NTDB_id=196671 CDH89_RS06215 WP_064574854.1 1238467..1238949(-) (radC) [Escherichia coli strain EC1515]
MMEQSLIPLTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMVLYLNQQNRLIAHETLFA
GSISSTEVHPREVVKSALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGTQILSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=196671 CDH89_RS06215 WP_064574854.1 1238467..1238949(-) (radC) [Escherichia coli strain EC1515]
ATGATGGAACAGTCACTTATCCCACTGACTCCGGTACTACCACTAACAGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTAGCATTCACTTCCACTCAGGCTGCCCGTGACTGGCTGAAACTGAAAATGG
CGGGACTGGAGCGCGAAGAGTTTATGGTGCTGTATCTGAACCAGCAGAACCGGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCTCGTGAGGTGGTCAAAAGCGCCCTGTACTTCAATGCGGCGGCGGTAATATT
GGCGCATAACCATCCCTCCGGCGACACTACCCCCAGCCAGGCAGATAAGACCATAACGCAGCGTCTGGTACAGGCGCTTC
AGCTCGTTGATATCCGTGTGCCTGACCACCTTATCGTCGGTGGTACGCAGATATTGTCGTTCGCTGAACATGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65

0.381