Detailed information NTG0196667

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CDH89_RS05715
• Genome accession: NZ_CP021844
• Coordinates: 1147961..1148953 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC1515
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1142961..1153953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDH89_RS05685 (CDH89_05680)	ispD	1143022..1143732 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CDH89_RS05690 (CDH89_05685)	ispF	1143732..1144211 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CDH89_RS05695 (CDH89_05690)	truD	1144208..1145257 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CDH89_RS05700 (CDH89_05695)	surE	1145238..1145999 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CDH89_RS05705 (CDH89_05700)	pcm	1145993..1146619 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CDH89_RS05710 (CDH89_05705)	nlpD	1146804..1147898 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CDH89_RS05715 (CDH89_05710)	rpoS	1147961..1148953 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CDH89_RS05720 (CDH89_05715)	-	1149073..1149480 (-)	408	WP_021577850.1	MarR family transcriptional regulator	-
CDH89_RS05725 (CDH89_05720)	-	1149627..1150220 (+)	594	WP_021577849.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CDH89_RS05730 (CDH89_05725)	-	1150220..1151646 (+)	1427	Protein_1064	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CDH89_RS05735 (CDH89_05730)	-	1151657..1151893 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CDH89_RS05740 (CDH89_05735)	pphB	1151934..1152590 (-)	657	WP_021577846.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=196667 CDH89_RS05715 WP_000081550.1 1147961..1148953(+) (rpoS) [Escherichia coli strain EC1515]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=196667 CDH89_RS05715 WP_000081550.1 1147961..1148953(+) (rpoS) [Escherichia coli strain EC1515]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTAATTCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715