Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH89_RS04240 Genome accession   NZ_CP021844
Coordinates   847836..848312 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain EC1515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 842836..853312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH89_RS04210 (CDH89_04210) - 843724..844991 (-) 1268 Protein_778 integrase arm-type DNA-binding domain-containing protein -
  CDH89_RS04215 (CDH89_04215) - 845285..846127 (-) 843 Protein_779 DUF4942 domain-containing protein -
  CDH89_RS04220 (CDH89_04220) - 846212..846409 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  CDH89_RS28120 - 846437..846634 (-) 198 Protein_781 DUF5983 family protein -
  CDH89_RS04225 (CDH89_04225) cbtA 846631..847008 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CDH89_RS04230 (CDH89_04230) - 847098..847466 (-) 369 WP_053287563.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CDH89_RS04235 (CDH89_04235) - 847546..847767 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  CDH89_RS04240 (CDH89_04240) radC 847836..848312 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  CDH89_RS04245 (CDH89_04245) - 848327..848806 (-) 480 WP_053287564.1 antirestriction protein -
  CDH89_RS04250 (CDH89_04250) - 848888..849706 (-) 819 WP_053287565.1 DUF932 domain-containing protein -
  CDH89_RS04260 (CDH89_04260) - 850033..852879 (-) 2847 WP_088172201.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=196663 CDH89_RS04240 WP_001186747.1 847836..848312(-) (radC) [Escherichia coli strain EC1515]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=196663 CDH89_RS04240 WP_001186747.1 847836..848312(-) (radC) [Escherichia coli strain EC1515]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCGGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392