Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BHT24_RS05650 Genome accession   NZ_CP017220
Coordinates   1092988..1093617 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FAM21845     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087988..1098617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHT24_RS05625 (BHT24_05325) ycbZ 1088389..1090149 (-) 1761 WP_000156518.1 AAA family ATPase -
  BHT24_RS05630 (BHT24_05330) matP 1090335..1090787 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BHT24_RS05635 (BHT24_05335) ompA 1090863..1091903 (-) 1041 WP_000750416.1 porin OmpA -
  BHT24_RS05645 (BHT24_05345) sulA 1092260..1092769 (-) 510 WP_057107592.1 SOS-induced cell division inhibitor SulA -
  BHT24_RS05650 (BHT24_05350) sxy/tfoX 1092988..1093617 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BHT24_RS05655 (BHT24_05355) yccS 1093580..1095742 (-) 2163 WP_000875061.1 YccS family putative transporter -
  BHT24_RS05660 (BHT24_05360) yccF 1095752..1096198 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BHT24_RS05665 (BHT24_05365) helD 1096321..1098375 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=196640 BHT24_RS05650 WP_000839153.1 1092988..1093617(+) (sxy/tfoX) [Escherichia coli strain FAM21845]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=196640 BHT24_RS05650 WP_000839153.1 1092988..1093617(+) (sxy/tfoX) [Escherichia coli strain FAM21845]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment